Basic Information:

  VIRBase ID:  

VHID00596316

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m21-1:  MIMAT0005540          Abcc1:  NM_008576     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m21-1	Abcc1
miRBase Accession/Entrez ID	MIMAT0005540	17250
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	Abcc//Abcc1a//Abcc1b//M//Md//Mdrap//Mr//MRP//Mrp1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Abcc1	chr16:14365767-14365768(+) m6A 5'UTR//intron       25569111 chr16:14365811-14365812(+) m6A 5'UTR//intron       25569111 chr16:14389861-14389862(+) m6A CDS       25569111//22608085 chr16:14445446-14445447(+) m6A 3'UTR//CDS       25683224 chr16:14447484-14447485(+) m6A 3'UTR//CDS       25683224 chr16:14467012-14467013(+) m6A 3'UTR//CDS//exon       25412662 chr16:14467044-14467045(+) m6A 3'UTR//CDS//exon       25412662 chr16:14467067-14467068(+) m6A 3'UTR//CDS//exon       25412662 chr16:14467086-14467087(+) m6A 3'UTR//CDS//exon       25412662 chr16:14467103-14467104(+) m6A exon//intron       25412662 chr16:14467108-14467109(+) m6A exon//intron       25412662 chr16:14467142-14467143(+) m6A exon//intron       25412662 chr16:14467196-14467197(+) m6A exon//intron       25412662 chr16:14467916-14467917(+) m6A 3'UTR//CDS//exon       22608085 chr16:14467922-14467923(+) m6A 3'UTR//CDS//exon       22608085 chr16:14472070-14472071(+) m6A 3'UTR//CDS//exon       25683224//22608085 chr16:14472097-14472098(+) m6A 3'UTR//CDS//exon       25683224//25569111//22608085 chr16:14472859-14472860(+) m6A 3'UTR//CDS//exon       25683224//25569111 chr16:14472899-14472900(+) m6A 3'UTR//CDS//exon       25683224//25569111 chr16:14472907-14472908(+) m6A 3'UTR//CDS//exon       25683224//25569111 chr16:14472937-14472938(+) m6A 3'UTR//CDS//exon       25569111 chr16:14472950-14472951(+) m6A 3'UTR//CDS//exon       24981863//25569111 chr16:14472995-14472996(+) m6A 3'UTR//CDS//exon       25683224//24981863//25569111 chr16:14473473-14473474(+) m6A 3'UTR//CDS//exon       25683224//24981863//25569111 chr16:14473594-14473595(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr16:14473644-14473645(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr16:14473659-14473660(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr16:14473664-14473665(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr16:14473684-14473685(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr16:14473689-14473690(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr16:14473766-14473767(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr16:14473864-14473865(+) m6A 3'UTR//exon       25683224//24981863//25456834//25569111//22608085 chr16:14473880-14473881(+) m6A 3'UTR//exon       25683224//24981863//25456834//25569111//22608085 chr16:14474025-14474026(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr16:14474033-14474034(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085 chr16:14474043-14474044(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr16:14474063-14474064(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr16:14474170-14474171(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr16:14474181-14474182(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr16:14474199-14474200(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr16:14474209-14474210(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr16:14474220-14474221(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr16:14474250-14474251(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr16:14474395-14474396(+) m6A 3'UTR       24981863//25569111//22608085 chr16:14474427-14474428(+) m6A 3'UTR       24981863//25569111 chr16:14474611-14474612(+) m6A 3'UTR       24981863//25569111 chr16:14474622-14474623(+) m6A 3'UTR       24981863//25569111 chr16:14474641-14474642(+) m6A 3'UTR       24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Abcc1	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m21-1
Interactor2: Abcc1

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar