Detail Information

Basic Information:


  VIRBase ID:  

VHID00595078

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-3-5p:           Lrig2:      

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Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m01-3-5p Lrig2
miRBase
Accession/Entrez ID		 MIMAT0005536 269473
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 4632419I10Rik//BB096938//LIG-2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Lrig2
chr3:104308036(-) A-I      intronic
chr3:104287285(-) A-I      intronic
chr3:104291803(-) A-I      intronic
chr3:104308041(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Lrig2
chr3:104483362(-) A-I intron -    22524474
chr3:104487880(-) A-I intron -    22524474
chr3:104504113(-) A-I intron -    22524474
chr3:104504118(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Lrig2
chr3:104454528-104454529(-) m6A 3'UTR//intron       25456834//22608085
chr3:104454586-104454587(-) m6A 3'UTR//intron       25456834
chr3:104454686-104454687(-) m6A 3'UTR//intron       25456834
chr3:104455374-104455375(-) m6A 3'UTR//intron       24981863//22608085
chr3:104455426-104455427(-) m6A 3'UTR//intron       25456834//24981863//22608085
chr3:104455514-104455515(-) Y 3'UTR//exon       26075521
chr3:104455520-104455521(-) m6A 3'UTR//intron       25456834//24981863//25569111
chr3:104455659-104455660(-) m6A 3'UTR//intron       25569111
chr3:104455848-104455849(-) m6A 3'UTR//intron       25456834//24981863//25569111//22608085
chr3:104455855-104455856(-) m6A 3'UTR//intron       25456834//24981863//25569111//22608085
chr3:104455868-104455869(-) m6A 3'UTR//intron       25456834//24981863//25569111//22608085
chr3:104455904-104455905(-) m6A 3'UTR//intron       25456834//24981863//25569111//22608085
chr3:104455919-104455920(-) m6A 3'UTR//intron       25456834//24981863//25569111//22608085
chr3:104455987-104455988(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085
chr3:104456031-104456032(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085
chr3:104456076-104456077(-) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085
chr3:104456726-104456727(-) m6A 3'UTR//exon//intron       24981863
chr3:104456910-104456911(-) m6A 3'UTR//exon//intron       24981863
chr3:104457537-104457538(-) m6A 3'UTR//exon//intron       25456834//24981863//25569111//22608085
chr3:104457734-104457735(-) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111//22608085//22575960
chr3:104457799-104457800(-) m6A CDS//exon//intron       25683224//25456834//24981863//25569111//22608085//22575960
chr3:104457926-104457927(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr3:104457933-104457934(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr3:104457939-104457940(-) m6A CDS//exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr3:104459215-104459216(-) m6A exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr3:104461426-104461427(-) m6A CDS//exon       25569111
chr3:104461625-104461626(-) m6A CDS//exon       25569111//22608085
chr3:104463863-104463864(-) m6A CDS//exon       24981863//25569111
chr3:104463878-104463879(-) m6A CDS//exon       24981863//25569111
chr3:104463978-104463979(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr3:104464057-104464058(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr3:104464068-104464069(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr3:104464200-104464201(-) m6A CDS//exon       25683224//25456834//24981863//25569111
chr3:104464254-104464255(-) m6A CDS//exon       25569111
chr3:104464272-104464273(-) m6A CDS//exon       25569111
chr3:104464277-104464278(-) m6A CDS//exon       25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Lrig2
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m01-3-5p
Interactor2: Lrig2

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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