Basic Information:

  VIRBase ID:  

VHID00594789

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-3-5p:  MIMAT0005536          Fbxo21:  NM_145564     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m01-3-5p	Fbxo21
miRBase Accession/Entrez ID	MIMAT0005536	231670
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	2810425J22Rik//AU016673

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Fbxo21	chr5:117976795-117976796(+) m6A 5'UTR//exon       25412662//24981863//25569111 chr5:117976819-117976820(+) m6A CDS//exon       25412662//24981863//25569111 chr5:117976951-117976952(+) m6A CDS//exon       25412662//24981863 chr5:117994614-117994615(+) m1A CDS//intron       26863196 chr5:117995404-117995405(+) m6A CDS       25683224//25412662//24981863//22608085 chr5:117995413-117995414(+) m6A CDS       25683224//25412662//24981863//22608085 chr5:117995437-117995438(+) m6A CDS       25683224//25412662//24981863//22608085 chr5:117995468-117995469(+) m6A CDS       25683224//25412662//24981863//22608085 chr5:118000364-118000365(+) m6A CDS       25683224//24981863//22608085 chr5:118000371-118000372(+) m6A CDS       25683224//24981863//22608085 chr5:118002046-118002047(+) m6A CDS       25683224 chr5:118002082-118002083(+) m6A CDS       25569111 chr5:118008012-118008013(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr5:118008132-118008133(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr5:118008152-118008153(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr5:118008183-118008184(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr5:118008197-118008198(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960 chr5:118008255-118008256(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:118008301-118008302(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:118008367-118008368(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:118008527-118008528(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr5:118008562-118008563(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr5:118008675-118008676(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr5:118008734-118008735(+) m6A 3'UTR       22608085 chr5:118008975-118008976(+) m6A 3'UTR       25683224//24981863//25569111//26404942 chr5:118008997-118008998(+) m6A 3'UTR       25683224//24981863//25569111//26404942 chr5:118009036-118009037(+) m6A 3'UTR       25683224//24981863//25569111//26404942 chr5:118009060-118009061(+) m6A 3'UTR       25683224//24981863//25569111//26404942 chr5:118009102-118009103(+) m6A 3'UTR       25683224//24981863//25569111//26404942 chr5:118009299-118009300(+) m6A 3'UTR       24981863//25569111//22608085 chr5:118009584-118009585(+) m6A 3'UTR       24981863//25569111 chr5:118009605-118009606(+) m6A 3'UTR       24981863//25569111 chr5:118009619-118009620(+) m6A 3'UTR       24981863//25569111 chr5:118009684-118009685(+) m6A 3'UTR       24981863//25569111 chr5:118009702-118009703(+) m6A 3'UTR       24981863//25569111 chr5:118009858-118009859(+) m6A 3'UTR       24981863//26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Fbxo21	Cytoplasm Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m01-3-5p
Interactor2: Fbxo21

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar