Basic Information:

  VIRBase ID:  

VHID00594665

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-3-5p:  MIMAT0005536          Cnst:  NM_146105     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m01-3-5p	Cnst
miRBase Accession/Entrez ID	MIMAT0005536	226744
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	9630058J23Rik

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Cnst	chr1:179546511-179546512(+) m6A 5'UTR//exon       25412662//24981863//25569111 chr1:179546568-179546569(+) m6A 5'UTR//exon       25569111 chr1:179579366-179579367(+) m6A 5'UTR//exon       25412662//25569111 chr1:179579456-179579457(+) m6A CDS//exon       25412662//25569111 chr1:179579583-179579584(+) m6A CDS//exon       25456834//25412662//24981863//25569111 chr1:179579588-179579589(+) m6A CDS//exon       25456834//25412662//24981863//25569111 chr1:179579654-179579655(+) m6A CDS//exon       25456834//25412662//24981863//25569111 chr1:179579697-179579698(+) m6A CDS//exon       25456834//25412662//24981863//25569111 chr1:179579702-179579703(+) m6A CDS//exon       25456834//25412662//24981863//25569111 chr1:179579709-179579710(+) m6A CDS//exon       25456834//25412662//24981863//25569111 chr1:179579811-179579812(+) m6A exon//intron       25683224//24981863 chr1:179592834-179592835(+) m6A CDS//exon       25412662 chr1:179606450-179606451(+) m6A CDS       25683224//25412662//24981863//25569111 chr1:179606508-179606509(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr1:179609793-179609794(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr1:179609821-179609822(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179609880-179609881(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179609904-179609905(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179609917-179609918(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179609959-179609960(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179609982-179609983(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:179610031-179610032(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179610064-179610065(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179610085-179610086(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179610203-179610204(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:179610247-179610248(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:179610339-179610340(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:179610433-179610434(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:179610442-179610443(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179610466-179610467(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179610529-179610530(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179610562-179610563(+) m6A CDS       25412662//24981863//25569111 chr1:179625072-179625073(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:179625121-179625122(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:179625139-179625140(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:179625182-179625183(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:179625239-179625240(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:179625254-179625255(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:179625289-179625290(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179625314-179625315(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179625335-179625336(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179625348-179625349(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179625363-179625364(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:179625384-179625385(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:179625588-179625589(+) m6A 3'UTR       25683224//24981863 chr1:179625784-179625785(+) m6A 3'UTR       25683224//25456834//24981863//25412662//25569111//22608085 chr1:179625793-179625794(+) m6A 3'UTR       25683224//25456834//24981863//25412662//25569111//22608085 chr1:179625822-179625823(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179625830-179625831(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179625844-179625845(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179625869-179625870(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179625874-179625875(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179625960-179625961(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr1:179626051-179626052(+) m6A 3'UTR       25569111 chr1:179626076-179626077(+) m6A 3'UTR       25569111 chr1:179626600-179626601(+) m6A 3'UTR       25569111 chr1:179627081-179627082(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr1:179627188-179627189(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:179627208-179627209(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:179627237-179627238(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:179627252-179627253(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:179627270-179627271(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:179627349-179627350(+) m6A 3'UTR       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Cnst	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m01-3-5p
Interactor2: Cnst

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar