Detail

Basic Information:

VIRBase ID:

VHID00593524

Virus:

Murid betaherpesvirus 1

Host:

Mus musculus

Confidence Score:

0.1828

Interaction Type:

Virus-Host interaction

Predicted Binding:

*It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m01-3-5p	Pcgf6
miRBase Accession/Entrez ID	MIMAT0005536	71041
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	4933407A11Rik//AI604840//MB//MBLR//Rnf1//Rnf134

RNA Modification:

Resource

Symbol

ModificationPosition

Type

Genomic Context

PMID

RMBase

Pcgf6

chr19:47034300-47034301(-)	m6A	3'UTR	25456834//25569111
chr19:47034396-47034397(-)	m6A	3'UTR	25456834//24981863//25569111
chr19:47034403-47034404(-)	m6A	3'UTR	25456834//24981863//25569111//22608085
chr19:47034429-47034430(-)	m6A	3'UTR	25456834//24981863//25569111//22608085
chr19:47034438-47034439(-)	m6A	3'UTR	25456834//24981863//25569111//22608085
chr19:47034466-47034467(-)	m6A	3'UTR	25456834//24981863//25569111//22608085
chr19:47034495-47034496(-)	m6A	3'UTR	25456834//24981863//25569111
chr19:47034601-47034602(-)	m6A	3'UTR	25569111
chr19:47037281-47037282(-)	m6A	CDS	25569111//22608085
chr19:47045882-47045883(-)	m6A	CDS	24981863
chr19:47048142-47048143(-)	m6A	CDS	24981863
chr19:47049078-47049079(-)	m6A	CDS	25412662//24981863//25569111
chr19:47050469-47050470(-)	m6A	CDS	25412662//24981863//25456834//25569111
chr19:47050571-47050572(-)	m6A	CDS	25412662//24981863//25456834//25569111
chr19:47050787-47050788(-)	m6A	CDS	25683224//25412662//24981863//25569111

RNA Localization:

Resource

Symbol

Subcellular Localization

Tissue or Cell Line

PMID

RNALocate

Pcgf6

Nucleus

Neuroblastoma cell line (N2A)

22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m01-3-5p

Interactor2: Pcgf6

Evidence Support:

Prediction-Evidence	Rep
Support Database	RepTar