Detail Information

Basic Information:


  VIRBase ID:  

VHID00593495

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-3-5p:           Arhgap17:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m01-3-5p Arhgap17
miRBase
Accession/Entrez ID		 MIMAT0005536 70497
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 5730403H17Rik//N//Na//Nadrin//Nadrin2//Ric//Rich1//WBP1//Wbp15

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Arhgap17
chr7:123279356-123279357(-) m6A 3'UTR       24981863//25569111
chr7:123279361-123279362(-) m6A 3'UTR       24981863//25569111
chr7:123279366-123279367(-) m6A 3'UTR       24981863//25569111
chr7:123279371-123279372(-) m6A 3'UTR       24981863//25569111
chr7:123279484-123279485(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr7:123279537-123279538(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960
chr7:123279579-123279580(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960
chr7:123279617-123279618(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960
chr7:123279639-123279640(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960
chr7:123279665-123279666(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr7:123279740-123279741(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr7:123279853-123279854(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr7:123279858-123279859(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr7:123279904-123279905(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr7:123279909-123279910(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr7:123279939-123279940(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr7:123280013-123280014(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr7:123280019-123280020(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr7:123280058-123280059(-) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//22575960
chr7:123283005-123283006(-) m6A exon//intron       25683224//24981863
chr7:123286229-123286230(-) m6A exon//intron       24981863
chr7:123286621-123286622(-) m6A 3'UTR//CDS       25683224//25412662//24981863//25569111
chr7:123286632-123286633(-) m6A 3'UTR//CDS       25683224//25412662//24981863//25569111
chr7:123286650-123286651(-) m6A 3'UTR//CDS       25683224//25412662//24981863//25456834//25569111
chr7:123286707-123286708(-) m6A 3'UTR//CDS       25683224//25412662//24981863//25456834//25569111
chr7:123286735-123286736(-) m6A 3'UTR//CDS       25683224//25412662//24981863//25456834//25569111
chr7:123286741-123286742(-) m6A 3'UTR//CDS       25683224//25412662//24981863//25456834//25569111
chr7:123286836-123286837(-) m6A 3'UTR//CDS       25683224//25412662//24981863//25456834//25569111
chr7:123286948-123286949(-) m6A 3'UTR//CDS       25683224//25412662//24981863
chr7:123286973-123286974(-) m6A 3'UTR//CDS       25683224//25412662//24981863
chr7:123286981-123286982(-) m6A 3'UTR//CDS       25683224//25412662//24981863
chr7:123287002-123287003(-) m6A 3'UTR//CDS//exon       25683224//25412662//24981863
chr7:123292113-123292114(-) m6A 3'UTR//CDS//exon       24981863
chr7:123292124-123292125(-) m6A 3'UTR//CDS//exon       24981863
chr7:123292151-123292152(-) m6A 3'UTR//CDS//exon       24981863
chr7:123292187-123292188(-) m6A 3'UTR//CDS//exon       24981863
chr7:123295317-123295318(-) m6A exon//intron       25683224
chr7:123327326-123327327(-) m6A CDS//exon       24981863//25569111
chr7:123331254-123331255(-) m6A CDS//exon//intron       24981863//25569111
chr7:123368891-123368892(-) m6A exon//intron       24981863
chr7:123369763-123369764(-) m6A CDS//exon       24981863//25569111
chr7:123369868-123369869(-) m6A 5'UTR//exon       24981863//25569111

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m01-3-5p
Interactor2: Arhgap17

Evidence Support:


Prediction-Evidence cRep
Support Database RepTar

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