Basic Information:

  VIRBase ID:  

VHID00592791

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-3-5p:  MIMAT0005536          Rif1:  NM_001355414     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m01-3-5p	Rif1
miRBase Accession/Entrez ID	MIMAT0005536	51869
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	5730435J01Rik//6530403D07Rik//AU016181//AW549474//D2Ertd145//D2Ertd145e

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Rif1	chr2:52073191-52073192(+) m6A CDS//exon       25412662//25569111//22608085 chr2:52073201-52073202(+) m6A CDS//exon       25412662//25569111//22608085 chr2:52106984-52106985(+) m6A CDS//exon       24981863//22608085 chr2:52107744-52107745(+) m6A CDS       25412662//24981863 chr2:52108444-52108445(+) m6A CDS       24981863 chr2:52109235-52109236(+) m6A CDS       24981863//25569111 chr2:52109374-52109375(+) m6A CDS       25456834//24981863//25569111//22608085 chr2:52109959-52109960(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:52109975-52109976(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr2:52110024-52110025(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr2:52110036-52110037(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr2:52110120-52110121(+) m6A CDS       25456834//24981863//25569111//22608085 chr2:52110168-52110169(+) m6A CDS       25456834//24981863//25412662//25569111//22608085 chr2:52110194-52110195(+) m6A CDS       25456834//25412662//24981863//25569111//22608085 chr2:52110234-52110235(+) m6A CDS       25456834//25412662//24981863//25569111//22608085 chr2:52110239-52110240(+) m6A CDS       25456834//25412662//24981863//25569111//22608085 chr2:52110355-52110356(+) m6A CDS       25456834//24981863//25569111//22608085 chr2:52110467-52110468(+) m6A CDS       24981863//25456834//25569111//22608085 chr2:52110521-52110522(+) m6A CDS       24981863//25569111//22608085 chr2:52110587-52110588(+) m6A CDS       24981863//25569111 chr2:52110616-52110617(+) m6A CDS       24981863//25569111 chr2:52110690-52110691(+) m6A CDS       24981863//25569111 chr2:52110695-52110696(+) m6A CDS       24981863//25569111 chr2:52110747-52110748(+) m6A CDS       24981863//25569111 chr2:52110911-52110912(+) m6A CDS       25456834//24981863//25569111 chr2:52110975-52110976(+) m6A CDS       25456834//24981863//25569111//22608085 chr2:52110986-52110987(+) m6A CDS//exon       25456834//24981863//25569111//22608085 chr2:52111025-52111026(+) m6A CDS//exon       25456834//24981863//25569111//22608085 chr2:52111030-52111031(+) m6A CDS//exon       25456834//24981863//25569111 chr2:52111072-52111073(+) m6A CDS//exon       25456834//24981863//25569111 chr2:52111081-52111082(+) m6A CDS//exon       25456834//24981863//25569111 chr2:52111097-52111098(+) m6A CDS//exon       25456834//24981863//25569111 chr2:52111113-52111114(+) m6A CDS//exon       25456834//24981863//25569111 chr2:52111125-52111126(+) m6A CDS//exon       25412662//24981863//25456834//25569111 chr2:52111165-52111166(+) m6A CDS//exon       25412662//24981863//25569111 chr2:52111265-52111266(+) m6A CDS//exon       25412662//24981863//25569111 chr2:52111302-52111303(+) m6A CDS//exon       24981863//25569111 chr2:52111314-52111315(+) m6A CDS//exon       24981863//25569111 chr2:52111483-52111484(+) m6A CDS//exon       24981863//25569111 chr2:52111519-52111520(+) m6A CDS//exon       24981863//25569111 chr2:52111527-52111528(+) m6A CDS//exon       24981863//25569111 chr2:52111559-52111560(+) m6A CDS//exon       25683224//24981863//25569111 chr2:52111591-52111592(+) m6A CDS//exon       25683224//24981863//25569111 chr2:52111729-52111730(+) m6A CDS//exon       25683224//24981863//25569111 chr2:52111770-52111771(+) m6A CDS//exon       25683224//24981863//25569111 chr2:52111791-52111792(+) m6A CDS//exon       25683224//24981863//25569111 chr2:52111803-52111804(+) m6A CDS//exon       25683224//24981863//25569111 chr2:52111830-52111831(+) m6A CDS//exon       25683224//24981863//25569111 chr2:52111974-52111975(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr2:52112032-52112033(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr2:52112050-52112051(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr2:52112074-52112075(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr2:52112175-52112176(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr2:52112338-52112339(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr2:52112397-52112398(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr2:52112470-52112471(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr2:52112539-52112540(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr2:52112585-52112586(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr2:52112643-52112644(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr2:52112658-52112659(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr2:52112664-52112665(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr2:52112675-52112676(+) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085 chr2:52112810-52112811(+) m6A CDS//exon       24981863//25456834//25569111//22608085 chr2:52112957-52112958(+) m6A CDS//exon       24981863//25569111 chr2:52119059-52119060(+) m6A CDS//exon       25569111//22608085 chr2:52119101-52119102(+) m6A CDS//exon       25569111//22608085 chr2:52120273-52120274(+) m6A CDS//exon       25569111//22608085 chr2:52120334-52120335(+) m6A CDS//exon       25569111 chr2:52120418-52120419(+) m6A exon//intron       25569111 chr2:52121001-52121002(+) m6A CDS//exon       25683224//24981863//25569111 chr2:52121072-52121073(+) m6A CDS//exon       25683224//24981863//25456834//25569111 chr2:52121127-52121128(+) m6A CDS//exon       25683224//24981863//25456834//25569111 chr2:52121144-52121145(+) m6A CDS//exon       25683224//24981863//25456834//25569111 chr2:52121284-52121285(+) m6A 3'UTR//exon       24981863//25569111 chr2:52121606-52121607(+) m6A 3'UTR//exon       24981863 chr2:52121636-52121637(+) m6A 3'UTR//exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Rif1	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m01-3-5p
Interactor2: Rif1

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar