Basic Information:

  VIRBase ID:  

VHID00592332

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-3-5p:  MIMAT0005536          Rela:  NM_009045     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m01-3-5p	Rela
miRBase Accession/Entrez ID	MIMAT0005536	19697
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	p6//p65//p65 NF-kappa B//p65 NFkB

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Rela	chr19:5642274(+) A-I      intronic chr19:5642278(+) A-I      intronic chr19:5642269(+) A-I      intronic chr19:5642271(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Rela	chr19:5642269(+) A-I intron -    22524474 chr19:5642271(+) A-I intron -    22524474 chr19:5642274(+) A-I intron -    22524474 chr19:5642278(+) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Rela	chr19:5637506-5637507(+) m6A 5'UTR       25412662//25569111 chr19:5637512-5637513(+) m6A 5'UTR       25412662//25569111 chr19:5637560-5637561(+) m6A 5'UTR       25412662//25569111 chr19:5637825-5637826(+) m6A 5'UTR       25569111 chr19:5638684-5638685(+) m6A CDS       24981863 chr19:5638871-5638872(+) m6A CDS       24981863 chr19:5638878-5638879(+) m6A CDS       24981863 chr19:5641558-5641559(+) m6A CDS       25569111 chr19:5641670-5641671(+) m6A CDS       25569111 chr19:5645359-5645360(+) m6A CDS       25412662//24981863//25569111 chr19:5645368-5645369(+) m6A CDS       25412662//24981863//25569111 chr19:5645389-5645390(+) m1A CDS       26863196 chr19:5645522-5645523(+) m6A CDS       25412662//24981863 chr19:5645563-5645564(+) m6A CDS       25412662//24981863 chr19:5646889-5646890(+) m6A CDS       25412662//24981863//25569111 chr19:5646936-5646937(+) m6A CDS       25412662//24981863//25569111 chr19:5647108-5647109(+) m6A CDS       25683224//25412662//24981863//25569111 chr19:5647138-5647139(+) m6A CDS       25683224//25412662//24981863//25569111 chr19:5647156-5647157(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr19:5647171-5647172(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr19:5647198-5647199(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22575960 chr19:5647320-5647321(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr19:5647357-5647358(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr19:5647375-5647376(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr19:5647381-5647382(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr19:5647618-5647619(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr19:5647661-5647662(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr19:5647712-5647713(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22575960 chr19:5647919-5647920(+) m6A 3'UTR       25412662//24981863 chr19:5647971-5647972(+) m6A 3'UTR       25412662//24981863 chr19:5648016-5648017(+) m6A 3'UTR       25569111 chr19:5648057-5648058(+) m6A 3'UTR       25569111 chr19:5648083-5648084(+) m6A 3'UTR       25569111 chr19:5648106-5648107(+) m6A 3'UTR       25569111

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m01-3-5p
Interactor2: Rela

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar