Detail Information

Basic Information:


  VIRBase ID:  

VHID00591017

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-2-5p:           Ahctf1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m01-2-5p Ahctf1
miRBase
Accession/Entrez ID		 MIMAT0005534 226747
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 6230412P20Rik//AV011447//El//Elys

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Ahctf1
chr1:181696728(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Ahctf1
chr1:179766597(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Ahctf1
chr1:179745156-179745157(-) m6A 3'UTR       24981863
chr1:179745272-179745273(-) m6A 3'UTR       24981863
chr1:179745422-179745423(-) m6A 3'UTR       25456834//24981863//25569111
chr1:179745484-179745485(-) m6A 3'UTR       25456834//24981863//25569111
chr1:179745502-179745503(-) m6A 3'UTR       25456834//24981863//25569111
chr1:179745567-179745568(-) m6A 3'UTR       25456834//24981863//25569111
chr1:179745619-179745620(-) m6A 3'UTR       25456834//24981863//25569111
chr1:179745696-179745697(-) m6A 3'UTR       25456834//24981863
chr1:179746400-179746401(-) m6A 3'UTR//CDS//exon       24981863//25456834
chr1:179746421-179746422(-) m6A 3'UTR//CDS//exon       24981863//25456834
chr1:179746439-179746440(-) m6A 3'UTR//CDS//exon       24981863//25456834
chr1:179746525-179746526(-) m6A CDS//exon//intron       -
chr1:179748603-179748604(-) m6A CDS//exon       24981863//25569111
chr1:179748683-179748684(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr1:179752364-179752365(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:179752371-179752372(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:179752381-179752382(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:179752397-179752398(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:179752412-179752413(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:179752458-179752459(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:179752507-179752508(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:179752563-179752564(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111
chr1:179752651-179752652(-) m6A CDS//exon       24981863//25569111
chr1:179752704-179752705(-) m6A CDS//exon       24981863//25456834//25569111
chr1:179752755-179752756(-) m6A CDS//exon       25683224//25412662//24981863//25456834//25569111//22608085
chr1:179752791-179752792(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr1:179752796-179752797(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr1:179752908-179752909(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:179752917-179752918(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:179752973-179752974(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:179753055-179753056(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr1:179753066-179753067(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr1:179753099-179753100(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr1:179753111-179753112(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111
chr1:179753154-179753155(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr1:179753175-179753176(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr1:179753278-179753279(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111
chr1:179753309-179753310(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111
chr1:179753330-179753331(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr1:179753348-179753349(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr1:179753385-179753386(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr1:179753432-179753433(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr1:179753474-179753475(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr1:179753487-179753488(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr1:179753498-179753499(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr1:179753512-179753513(-) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085
chr1:179753614-179753615(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr1:179753661-179753662(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960
chr1:179753681-179753682(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960
chr1:179753754-179753755(-) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//22608085//22575960
chr1:179753772-179753773(-) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//22608085
chr1:179753883-179753884(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr1:179753920-179753921(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr1:179753979-179753980(-) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr1:179755554-179755555(-) m6A CDS       25683224
chr1:179755565-179755566(-) m6A CDS       25683224//22608085
chr1:179757945-179757946(-) m6A CDS       25683224//22608085
chr1:179762613-179762614(-) m6A 3'UTR//CDS       24981863//25569111
chr1:179762638-179762639(-) m6A 3'UTR//CDS       24981863//25569111
chr1:179762690-179762691(-) m6A 3'UTR//CDS       25412662//24981863//25569111//22608085
chr1:179762727-179762728(-) m6A 3'UTR//CDS       25412662//24981863//25569111//22608085
chr1:179762732-179762733(-) m6A 3'UTR//CDS       25412662//24981863//25569111//22608085
chr1:179762756-179762757(-) m6A 3'UTR//CDS       25412662//24981863//25569111//22608085
chr1:179762776-179762777(-) m6A 3'UTR//CDS       25412662//24981863//25569111
chr1:179762877-179762878(-) m6A 3'UTR//CDS       25412662//24981863//25569111
chr1:179762892-179762893(-) m6A 3'UTR//CDS       25412662//24981863//25569111
chr1:179762905-179762906(-) m6A 3'UTR//CDS       25412662//24981863//25569111
chr1:179763477-179763478(-) m6A 3'UTR//CDS       25412662//24981863//25569111
chr1:179763519-179763520(-) m6A 3'UTR//CDS       25412662//24981863//25569111
chr1:179777811-179777812(-) m6A CDS       22608085
chr1:179779645-179779646(-) m6A CDS       22608085
chr1:179784126-179784127(-) m6A CDS       22608085
chr1:179784140-179784141(-) m6A CDS       22608085
chr1:179788211-179788212(-) m6A CDS       22608085
chr1:179788273-179788274(-) m6A CDS       22608085
chr1:179803405-179803406(-) m6A 5'UTR//exon       25412662//24981863//25569111
chr1:179803477-179803478(-) m6A 5'UTR//exon       25412662//24981863//25569111
chr1:179803488-179803489(-) m6A 5'UTR//exon       25412662//24981863//25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Ahctf1
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m01-2-5p
Interactor2: Ahctf1

Evidence Support:


Prediction-Evidence Rep
Support Database RepTar

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