Detail Information

Basic Information:


  VIRBase ID:  

VHID00591002

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-2-5p:           Kdm2a:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m01-2-5p Kdm2a
miRBase
Accession/Entrez ID		 MIMAT0005534 225876
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 100043628//5530401A10Rik//AA589516//AW536790//Cxxc8//Fbl//Fbl11//Fbl7//Fbxl1//Fbxl11//Gm4560//Jhdm1//Jhdm1a//lalina

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Kdm2a
chr19:4316338-4316339(-) m6A 3'UTR       24981863//25569111
chr19:4316477-4316478(-) Y 3'UTR//exon       26075521
chr19:4316757-4316758(-) m6A 3'UTR       24981863//25456834//25569111//22608085
chr19:4316832-4316833(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr19:4316863-4316864(-) m6A 3'UTR       25456834//24981863//25569111//22608085
chr19:4316999-4317000(-) m6A 3'UTR       24981863//25569111
chr19:4317048-4317049(-) m6A 3'UTR       25569111
chr19:4317163-4317164(-) Y 3'UTR//exon       26075521
chr19:4317329-4317330(-) m6A 3'UTR       25569111
chr19:4317398-4317399(-) m6A 3'UTR       24981863//25569111
chr19:4317413-4317414(-) m6A 3'UTR       24981863//25569111
chr19:4317519-4317520(-) m6A 3'UTR       24981863//25569111
chr19:4317552-4317553(-) m6A 3'UTR       24981863//25569111
chr19:4317568-4317569(-) m6A 3'UTR       24981863//25569111
chr19:4317578-4317579(-) m6A 3'UTR       24981863//25569111
chr19:4317626-4317627(-) m6A 3'UTR       24981863//25569111
chr19:4317782-4317783(-) m6A 3'UTR       25683224//24981863//25456834//25569111
chr19:4318038-4318039(-) m6A 3'UTR       25569111
chr19:4318174-4318175(-) m6A 3'UTR       24981863//25569111
chr19:4318181-4318182(-) m6A 3'UTR       24981863//25569111
chr19:4318316-4318317(-) m6A 3'UTR       24981863//25569111
chr19:4318378-4318379(-) m6A 3'UTR       24981863
chr19:4318453-4318454(-) m6A 3'UTR       -
chr19:4318595-4318596(-) m6A 3'UTR       22608085
chr19:4318635-4318636(-) m6A 3'UTR       25569111//22608085
chr19:4318761-4318762(-) m6A 3'UTR       24981863//25569111
chr19:4318937-4318938(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr19:4319077-4319078(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr19:4319082-4319083(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr19:4319097-4319098(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr19:4319120-4319121(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr19:4319160-4319161(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960
chr19:4319198-4319199(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960
chr19:4319257-4319258(-) m6A 3'UTR//CDS       25456834//24981863//25569111//22608085
chr19:4319262-4319263(-) m6A 3'UTR//CDS       25456834//24981863//25569111//22608085
chr19:4320339-4320340(-) m6A 3'UTR//CDS//exon       24981863//25569111//22608085
chr19:4320347-4320348(-) m6A 3'UTR//CDS//exon       24981863//25569111//22608085
chr19:4320360-4320361(-) m6A 3'UTR//CDS//exon       25569111//22608085
chr19:4320926-4320927(-) m6A 3'UTR//CDS//exon       25569111//22608085
chr19:4320941-4320942(-) m6A 3'UTR//CDS//exon       25569111//22608085
chr19:4320975-4320976(-) m6A CDS//exon       25569111//22608085
chr19:4321046-4321047(-) m6A CDS//exon       25569111
chr19:4322434-4322435(-) m6A CDS//exon       24981863//25569111
chr19:4322527-4322528(-) m6A CDS//exon       25683224//25456834//24981863//25569111//22608085
chr19:4322635-4322636(-) m6A exon//intron       25683224//25456834//24981863//25569111
chr19:4322665-4322666(-) m6A exon//intron       25683224//25456834//25569111
chr19:4322776-4322777(-) m6A exon//intron       24981863//25569111
chr19:4322785-4322786(-) m6A exon//intron       25683224//25456834//24981863//25569111//22608085
chr19:4324349-4324350(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:4324377-4324378(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:4324570-4324571(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:4324664-4324665(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:4324768-4324769(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:4326818-4326819(-) m6A CDS       25683224//25412662//24981863//25569111//22608085
chr19:4326827-4326828(-) m6A CDS       25683224//25412662//24981863//25569111//22608085
chr19:4328178-4328179(-) m6A CDS       25683224//22608085
chr19:4328191-4328192(-) m6A CDS       25683224//22608085
chr19:4328198-4328199(-) m6A CDS       25683224//22608085
chr19:4328253-4328254(-) m6A CDS       25683224//22608085
chr19:4333688-4333689(-) m6A CDS//intron       25569111
chr19:4333705-4333706(-) m6A CDS//intron       25569111
chr19:4333710-4333711(-) m6A CDS//intron       25569111
chr19:4333815-4333816(-) m6A 5'UTR//intron       25683224//24981863//25569111
chr19:4341437-4341438(-) m6A 3'UTR//intron       24981863//25569111
chr19:4342954-4342955(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr19:4343042-4343043(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr19:4343054-4343055(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr19:4343067-4343068(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr19:4343107-4343108(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr19:4343123-4343124(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:4343168-4343169(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr19:4343189-4343190(-) m6A CDS       25683224//25456834//24981863//25569111//22608085
chr19:4356816-4356817(-) m6A CDS//exon       25683224//25412662//22608085
chr19:4356839-4356840(-) m6A CDS//exon       25683224//25412662//22608085
chr19:4356854-4356855(-) m6A CDS//exon       25683224//25412662//22608085
chr19:4356892-4356893(-) m6A CDS//exon       25683224//25412662//22608085
chr19:4361569-4361570(-) m6A CDS//exon       25683224//25412662//22608085
chr19:4361987-4361988(-) m6A CDS//exon       25683224//22608085
chr19:4362015-4362016(-) m6A CDS//exon       25683224//22608085
chr19:4362820-4362821(-) m6A CDS//exon       25683224//22608085
chr19:4362847-4362848(-) m6A CDS//exon       25683224//22608085
chr19:4388466-4388467(-) m6A 3'UTR//intron       25683224
chr19:4396321-4396322(-) m6A 5'UTR//exon//intron       25683224//24981863//25569111
chr19:4396329-4396330(-) m6A 5'UTR//exon//intron       25683224//24981863//25569111
chr19:4396335-4396336(-) m6A 5'UTR//exon//intron       25683224//24981863//25569111
chr19:4397014-4397015(-) m6A 5'UTR//exon//intron       25412662//24981863//25569111
chr19:4398010-4398011(-) m6A 5'UTR       25456834//25412662//25569111
chr19:4398027-4398028(-) m6A 5'UTR       25683224//25456834//25569111
chr19:4398089-4398090(-) m6A 5'UTR       25683224//25456834//25569111
chr19:4398101-4398102(-) m6A 5'UTR       25683224//25456834//25569111
chr19:4398137-4398138(-) m6A 5'UTR       25683224//25456834//25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Kdm2a
Exosome Mast cells     17486113

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m01-2-5p
Interactor2: Kdm2a

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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