Detail Information

Basic Information:


  VIRBase ID:  

VHID00589936

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-2-5p:           Tial1:      

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Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m01-2-5p Tial1
miRBase
Accession/Entrez ID		 MIMAT0005534 21843
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 5330433G13Rik//AL033329//mT//mTIAR//T//TIAR

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Tial1
chr7:135594958(-) A-I      intronic
chr7:135594979(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Tial1
chr7:128451444(-) A-I intron -    22524474
chr7:128451465(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Tial1
chr7:128441584-128441585(-) m6A 3'UTR//exon       24981863
chr7:128441759-128441760(-) m6A 3'UTR//exon       24981863//25456834//22608085
chr7:128441883-128441884(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr7:128441896-128441897(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr7:128441945-128441946(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr7:128441971-128441972(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr7:128442080-128442081(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr7:128442139-128442140(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr7:128442221-128442222(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr7:128442282-128442283(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr7:128442303-128442304(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr7:128442329-128442330(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr7:128442381-128442382(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr7:128442410-128442411(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr7:128442456-128442457(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085
chr7:128442469-128442470(-) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr7:128442518-128442519(-) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr7:128442525-128442526(-) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr7:128442572-128442573(-) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr7:128442604-128442605(-) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr7:128443827-128443828(-) m6A 3'UTR//CDS//exon//intron       24981863//25569111
chr7:128443886-128443887(-) m6A 3'UTR//CDS//exon//intron       24981863//25569111
chr7:128443902-128443903(-) m6A 3'UTR//CDS//exon//intron       24981863//25569111
chr7:128443967-128443968(-) m6A exon//intron       24981863//25569111//22608085
chr7:128444662-128444663(-) m6A 3'UTR//CDS//exon//intron       24981863//22608085
chr7:128444683-128444684(-) m6A 3'UTR//CDS//exon//intron       24981863//22608085
chr7:128444852-128444853(-) m6A 3'UTR//CDS//exon//intron       24981863//22608085
chr7:128444870-128444871(-) m6A 3'UTR//CDS//exon//intron       24981863//22608085
chr7:128445678-128445679(-) m6A 3'UTR//CDS//exon//intron       24981863//22608085
chr7:128448564-128448565(-) m6A exon//intron       25412662//22608085
chr7:128448677-128448678(-) m6A CDS//exon//intron       25412662//22608085
chr7:128458618-128458619(-) m6A 5'UTR//intron       24981863//22608085
chr7:128458639-128458640(-) m6A 5'UTR//intron       24981863//22608085
chr7:128461128-128461129(-) m6A 5'UTR//CDS//exon       24981863//22608085
chr7:128461138-128461139(-) m6A 5'UTR//CDS//exon       24981863//22608085
chr7:128461290-128461291(-) m6A 5'UTR//exon       25412662//24981863//25456834//25569111//22608085
chr7:128461327-128461328(-) Y 5'UTR//exon       26075521
chr7:128461566-128461567(-) m6A 5'UTR//exon       24981863//25569111
chr7:128461609-128461610(-) m6A 5'UTR//exon       24981863//25569111
chr7:128461625-128461626(-) m6A 5'UTR//exon       24981863//25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Tial1
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m01-2-5p
Interactor2: Tial1

Evidence Support:


Prediction-Evidence cRep
Support Database RepTar

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