Basic Information:

  VIRBase ID:  

VHID00589654

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-2-5p:  MIMAT0005534          Itsn1:  NM_001110275     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m01-2-5p	Itsn1
miRBase Accession/Entrez ID	MIMAT0005534	16443
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	AA517634//AA545208//AI316805//AI839402//AI848451//EHSH//Ehsh1//Ese//Ese1//Itsn//Sh3p//Sh3p17

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Itsn1	chr16:91729520-91729521(+) m6A 5'UTR//exon       25412662//24981863//25569111 chr16:91782189-91782190(+) m6A 5'UTR//exon       25683224//25412662//22608085 chr16:91782270-91782271(+) m6A exon//intron       25683224//22608085 chr16:91815431-91815432(+) m6A CDS//exon//intron       24981863 chr16:91816949-91816950(+) m6A CDS//exon//intron       25683224//25412662//24981863//22608085 chr16:91818434-91818435(+) m6A CDS//exon//intron       25683224//25412662//24981863//22608085 chr16:91820464-91820465(+) m6A CDS//exon//intron       25683224//25412662//24981863//25456834 chr16:91820499-91820500(+) m6A CDS//exon//intron       25683224//25412662//24981863//25456834 chr16:91820506-91820507(+) m6A CDS//exon//intron       25683224//25412662//24981863//25456834 chr16:91820512-91820513(+) m6A CDS//exon//intron       25683224//25412662//24981863//25456834 chr16:91820529-91820530(+) m6A CDS//exon//intron       25683224//25412662//24981863 chr16:91820573-91820574(+) m6A CDS//exon//intron       25683224//25412662//24981863 chr16:91820707-91820708(+) m6A CDS//exon//intron       25683224//25412662//24981863 chr16:91820763-91820764(+) m6A CDS//exon//intron       25683224//25412662//24981863 chr16:91827898-91827899(+) m6A CDS//exon       25412662//24981863 chr16:91827922-91827923(+) m6A CDS//exon       25412662//24981863 chr16:91827936-91827937(+) m6A CDS//exon       25412662//24981863 chr16:91828196-91828197(+) m6A CDS//exon       25412662//24981863 chr16:91828285-91828286(+) m6A CDS//exon       25683224//25412662//24981863 chr16:91829579-91829580(+) m6A 3'UTR//intron       - chr16:91829637-91829638(+) m6A 3'UTR//intron       - chr16:91832318-91832319(+) m6A 3'UTR//intron       25412662//24981863 chr16:91837062-91837063(+) m6A CDS       25683224//25412662//24981863 chr16:91837083-91837084(+) m6A CDS       25683224//25412662//24981863 chr16:91839632-91839633(+) m6A CDS       25683224//25412662//24981863 chr16:91839684-91839685(+) m6A CDS       25683224//25412662//24981863 chr16:91839698-91839699(+) m6A CDS//exon       25683224//25412662//24981863 chr16:91839716-91839717(+) m6A CDS//exon       25683224//25412662//24981863 chr16:91839730-91839731(+) m1A CDS//exon       26863196 chr16:91839767-91839768(+) m6A CDS//exon       25683224//25412662//24981863 chr16:91848736-91848737(+) m6A CDS//intron       25683224//25412662//22608085 chr16:91848797-91848798(+) m6A 3'UTR//CDS//intron       25683224//25412662 chr16:91848843-91848844(+) m6A 3'UTR//CDS//intron       25683224//25412662//24981863//22608085 chr16:91848879-91848880(+) m6A 3'UTR//CDS//intron       25683224//25412662//24981863//22608085 chr16:91848895-91848896(+) m6A 3'UTR//CDS//intron       25683224//25412662//24981863//22608085 chr16:91848956-91848957(+) m6A 3'UTR//CDS//intron       25683224//25412662//24981863//22608085 chr16:91850840-91850841(+) m6A 3'UTR//CDS//exon       25412662//24981863//22608085 chr16:91850984-91850985(+) m6A exon//intron       25412662//22608085 chr16:91861202-91861203(+) m6A CDS//intron       25683224 chr16:91861214-91861215(+) m6A CDS//intron       25683224 chr16:91861234-91861235(+) m6A CDS//intron       25683224 chr16:91862051-91862052(+) m6A exon//intron       25683224 chr16:91862093-91862094(+) m6A exon//intron       25683224 chr16:91863046-91863047(+) m6A exon//intron       25412662 chr16:91863075-91863076(+) m6A exon//intron       25412662 chr16:91863081-91863082(+) m6A exon//intron       25412662 chr16:91869713-91869714(+) m6A CDS//exon       25412662//22608085 chr16:91869719-91869720(+) m6A CDS//exon       25412662//25569111//22608085 chr16:91869788-91869789(+) m6A CDS//exon       25412662//24981863//25569111//22608085 chr16:91869794-91869795(+) m6A CDS//exon       25412662//24981863//25569111//22608085 chr16:91870241-91870242(+) m6A 3'UTR//exon//intron       24981863//25569111 chr16:91870339-91870340(+) m6A 3'UTR//exon//intron       24981863//25569111 chr16:91870432-91870433(+) m6A 3'UTR//exon//intron       24981863//25569111 chr16:91870478-91870479(+) m6A 3'UTR//exon//intron       25569111 chr16:91870781-91870782(+) m6A 3'UTR//exon//intron       25569111 chr16:91870885-91870886(+) m6A 3'UTR//exon//intron       25569111 chr16:91871499-91871500(+) m6A 3'UTR//intron       25412662 chr16:91887489-91887490(+) m6A CDS//exon       25683224//22608085 chr16:91889128-91889129(+) m6A CDS//exon       25683224//22608085 chr16:91889215-91889216(+) m6A CDS//exon       25683224//22608085 chr16:91899514-91899515(+) m6A CDS//intron       25412662//22608085 chr16:91899526-91899527(+) m6A CDS//intron       25412662//22608085 chr16:91899535-91899536(+) m6A CDS//intron       25412662//22608085 chr16:91899616-91899617(+) m6A CDS//intron       25683224//25412662 chr16:91899622-91899623(+) m6A CDS//intron       25683224//25412662 chr16:91911874-91911875(+) m6A CDS       24981863 chr16:91911905-91911906(+) m6A CDS       24981863 chr16:91912156-91912157(+) m6A 3'UTR//exon       24981863 chr16:91912327-91912328(+) m6A 3'UTR//exon       24981863//22608085 chr16:91912350-91912351(+) m6A 3'UTR//exon       24981863//22608085 chr16:91912394-91912395(+) m6A 3'UTR//exon       24981863//22608085 chr16:91912505-91912506(+) m6A 3'UTR//exon       24981863 chr16:91913033-91913034(+) m6A 3'UTR//intron       24981863 chr16:91913043-91913044(+) m6A 3'UTR//intron       24981863 chr16:91913117-91913118(+) m6A 3'UTR//intron       24981863 chr16:91915985-91915986(+) m6A 3'UTR       25412662 chr16:91916123-91916124(+) m6A 3'UTR       25412662//24981863//22608085 chr16:91919775-91919776(+) m6A 3'UTR       26404942

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Itsn1	Cytoplasm Neuroblastoma cell line (N2A)     22406755 Exosome Mast cells     17486113

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m01-2-5p
Interactor2: Itsn1

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar