Detail Information

Basic Information:


  VIRBase ID:  

VHID00589511

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-2-5p:           Eif3a:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m01-2-5p Eif3a
miRBase
Accession/Entrez ID		 MIMAT0005534 13669
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - A830012B05Rik//Cs//Csma//Eif//Eif3//Eif3s//Eif3s10//mKIAA0139

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Eif3a
chr19:60761645-60761646(-) m6A 3'UTR       25569111//22608085
chr19:60761694-60761695(-) m6A 3'UTR       25569111//22608085
chr19:60761704-60761705(-) m6A 3'UTR       25569111//22608085
chr19:60761790-60761791(-) m6A 3'UTR       24981863//25456834//25569111
chr19:60761805-60761806(-) m6A 3'UTR       24981863//25456834//25569111
chr19:60761825-60761826(-) m6A 3'UTR       24981863//25456834//25569111
chr19:60761872-60761873(-) m6A 3'UTR       24981863//25456834
chr19:60761890-60761891(-) m6A 3'UTR       24981863//25456834
chr19:60761949-60761950(-) m6A 3'UTR       24981863//25456834
chr19:60762058-60762059(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr19:60762097-60762098(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:60762115-60762116(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:60762262-60762263(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:60763092-60763093(-) m6A CDS       25683224//25456834//25412662//24981863//25569111
chr19:60763129-60763130(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942
chr19:60763138-60763139(-) m6A CDS       25683224//25456834//25412662//24981863//25569111
chr19:60763177-60763178(-) m6A CDS       25683224//25456834//25412662//24981863//25569111
chr19:60763186-60763187(-) m6A CDS       25683224//25456834//25412662//24981863//25569111
chr19:60763239-60763240(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:60764036-60764037(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:60764058-60764059(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:60764076-60764077(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:60764094-60764095(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:60764130-60764131(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:60764142-60764143(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:60764171-60764172(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:60766349-60766350(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr19:60766364-60766365(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960
chr19:60766478-60766479(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960
chr19:60766631-60766632(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960
chr19:60766638-60766639(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960
chr19:60766679-60766680(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960
chr19:60766694-60766695(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960
chr19:60766798-60766799(-) m6A CDS       25683224//25456834//25412662//24981863//25569111
chr19:60766889-60766890(-) m6A CDS       25683224//25456834//25412662//24981863//25569111
chr19:60766978-60766979(-) m6A CDS       25683224//25456834//25412662//24981863//25569111
chr19:60767615-60767616(-) m6A CDS       25683224//25456834//25412662//24981863//25569111
chr19:60768734-60768735(-) m6A CDS       25683224//25456834//25412662//24981863//22608085
chr19:60768807-60768808(-) m1A CDS       26863196
chr19:60768815-60768816(-) m6A CDS       25683224//25456834//25412662//24981863//22608085
chr19:60768845-60768846(-) m6A CDS       25683224//25456834//25412662//24981863//22608085
chr19:60769903-60769904(-) m1A CDS       26863196
chr19:60770007-60770008(-) m6A CDS       25683224//25412662//24981863
chr19:60770013-60770014(-) m6A CDS       25683224//25412662//24981863
chr19:60771066-60771067(-) m6A CDS       25683224//25412662//24981863
chr19:60771661-60771662(-) m6A CDS       25683224//25412662//24981863
chr19:60771671-60771672(-) m6A CDS       25683224//25412662//24981863
chr19:60771677-60771678(-) m6A CDS       25683224//25412662//24981863
chr19:60771691-60771692(-) m6A CDS       25683224//25412662//24981863
chr19:60772125-60772126(-) m6A CDS       25683224//24981863
chr19:60772149-60772150(-) m6A CDS       25683224//25412662//24981863
chr19:60772158-60772159(-) m6A CDS       25683224//25412662//24981863
chr19:60772185-60772186(-) m6A CDS       25683224//25412662//24981863//25569111
chr19:60772732-60772733(-) m6A CDS       25683224//25412662//24981863//25569111
chr19:60772765-60772766(-) m6A CDS       25683224//25412662//24981863
chr19:60772787-60772788(-) m6A CDS       25683224//25412662//24981863
chr19:60772868-60772869(-) m6A CDS       25683224//25412662//24981863
chr19:60772889-60772890(-) m6A CDS       25683224//25412662//24981863
chr19:60772952-60772953(-) m6A CDS       25683224//25412662//24981863
chr19:60776741-60776742(-) m6A CDS       25683224//22608085
chr19:60781397-60781398(-) m6A CDS       22608085
chr19:60781409-60781410(-) m6A CDS       22608085
chr19:60781894-60781895(-) m6A CDS       22608085
chr19:60781960-60781961(-) m6A CDS       22608085
chr19:60782016-60782017(-) m6A CDS       22608085
chr19:60782180-60782181(-) m6A CDS       22608085
chr19:60782239-60782240(-) m6A CDS       22608085
chr19:60782270-60782271(-) Y CDS//exon       26075521
chr19:60782283-60782284(-) m6A CDS       22608085
chr19:60782317-60782318(-) Y CDS//exon       26075521
chr19:60790534-60790535(-) m6A 5'UTR       25569111//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Eif3a
Nucleus Neuroblastoma cell line (N2A)     22406755
Pseudopodium Migrating cells     18451862

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m01-2-5p
Interactor2: Eif3a

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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