Basic Information:

  VIRBase ID:  

VHID00589403

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-2-5p:  MIMAT0005534          Calu:  NM_184053     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m01-2-5p	Calu
miRBase Accession/Entrez ID	MIMAT0005534	12321
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	9530075H20Rik

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Calu	chr6:29348081-29348082(+) m6A 5'UTR       24981863//25569111 chr6:29356480-29356481(+) m6A CDS//intron       24981863//25569111//22575960 chr6:29356552-29356553(+) m6A CDS//intron       24981863//25569111 chr6:29361347-29361348(+) m6A CDS//intron       25683224//25412662//24981863//25569111//22608085 chr6:29361669-29361670(+) m6A 3'UTR//CDS//intron       24981863//22608085 chr6:29366073-29366074(+) m6A 3'UTR//5'UTR//CDS//intron       24981863//25569111//22608085 chr6:29366114-29366115(+) m6A 3'UTR//CDS//intron       24981863//25569111//22608085 chr6:29366126-29366127(+) m6A 3'UTR//CDS//intron       25412662//24981863//25569111//22608085 chr6:29366192-29366193(+) m6A 3'UTR//CDS//intron       25412662//24981863//25569111 chr6:29366919-29366920(+) m6A 3'UTR//CDS//intron       25412662//24981863//25569111 chr6:29366935-29366936(+) m6A 3'UTR//CDS//intron       25412662//24981863//25569111 chr6:29372520-29372521(+) m6A 3'UTR//CDS//intron       25412662//24981863//25569111 chr6:29372531-29372532(+) m6A 3'UTR//CDS//intron       25412662//24981863//25569111 chr6:29372557-29372558(+) m6A 3'UTR//CDS//intron       25412662//24981863//25569111 chr6:29372575-29372576(+) m6A 3'UTR//CDS//intron       25412662//24981863//25569111 chr6:29372586-29372587(+) m6A 3'UTR//CDS//intron       25412662//24981863//25569111 chr6:29372593-29372594(+) m6A 3'UTR//CDS//intron       25412662//24981863//25569111 chr6:29372611-29372612(+) m6A 3'UTR//CDS//intron       25412662//24981863//25569111 chr6:29372659-29372660(+) m6A 3'UTR//CDS//intron       25412662//24981863//25569111 chr6:29372665-29372666(+) m6A 3'UTR//CDS//intron       25412662//24981863//25569111 chr6:29372795-29372796(+) m6A 3'UTR//intron       25412662//24981863//25569111 chr6:29374510-29374511(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr6:29374518-29374519(+) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr6:29374584-29374585(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr6:29374597-29374598(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr6:29374678-29374679(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr6:29374695-29374696(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111//26404942//22608085//22575960 chr6:29374812-29374813(+) Y 3'UTR//exon//intron       26075521 chr6:29374951-29374952(+) m6A 3'UTR//exon//intron       25569111//22608085 chr6:29375472-29375473(+) m6A 3'UTR//intron       24981863//25569111//26404942//22608085 chr6:29375482-29375483(+) m6A 3'UTR//intron       24981863//25569111//22608085 chr6:29375513-29375514(+) m6A 3'UTR//intron       24981863//25569111//22608085 chr6:29375522-29375523(+) Y 3'UTR//exon//intron       26075521 chr6:29375554-29375555(+) m6A 3'UTR//intron       24981863//25569111//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Calu	Nucleus Neuroblastoma cell line (N2A)     22406755 Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m01-2-5p
Interactor2: Calu

Evidence Support:

Prediction-Evidence	Rep
Support Database	RepTar