Detail Information

Basic Information:


  VIRBase ID:  

VHID00589049

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-1:           Rc3h2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m01-1 Rc3h2
miRBase
Accession/Entrez ID		 MIMAT0005533 319817
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 2900024N03Rik//9430019J22Rik//D930043C02Rik//Mn//Mnab//Rnf1//Rnf164

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Rc3h2
chr2:37236452(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Rc3h2
chr2:37380932(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Rc3h2
chr2:37370274-37370275(-) m6A 3'UTR       25683224//24981863//25456834
chr2:37370313-37370314(-) m6A 3'UTR       25683224//24981863//25456834
chr2:37371195-37371196(-) Y 3'UTR//exon       26075521
chr2:37372187-37372188(-) m6A 3'UTR       24981863
chr2:37372201-37372202(-) m6A 3'UTR       24981863//26404942
chr2:37372227-37372228(-) m6A 3'UTR       24981863//26404942
chr2:37372299-37372300(-) m6A 3'UTR       24981863//26404942
chr2:37375265-37375266(-) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//22608085
chr2:37375303-37375304(-) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//22608085
chr2:37375415-37375416(-) m6A 3'UTR//CDS       25456834//24981863//25569111//22608085
chr2:37376653-37376654(-) m6A 3'UTR//CDS//intron       25412662//24981863//25569111
chr2:37376670-37376671(-) m6A 3'UTR//CDS       25412662//24981863//25569111
chr2:37376689-37376690(-) m6A 3'UTR//CDS       25412662//24981863//25569111
chr2:37376732-37376733(-) m6A 3'UTR//CDS       25412662//24981863
chr2:37376779-37376780(-) m6A 3'UTR//CDS       25683224//25412662
chr2:37382877-37382878(-) m6A 3'UTR//CDS       24981863
chr2:37383022-37383023(-) m6A 3'UTR//CDS       24981863//25569111
chr2:37385386-37385387(-) m6A 3'UTR//CDS       25569111//22608085
chr2:37385437-37385438(-) m6A 3'UTR//CDS       25683224//25569111
chr2:37387984-37387985(-) m6A exon//intron       25683224
chr2:37387997-37387998(-) m6A exon//intron       25683224
chr2:37389657-37389658(-) m6A 3'UTR//CDS//exon       25683224//24981863//25569111
chr2:37389666-37389667(-) m6A 3'UTR//CDS//exon       25683224//24981863//25569111
chr2:37389762-37389763(-) m6A CDS//exon       25683224//24981863//25569111
chr2:37389818-37389819(-) m6A CDS//exon//intron       25683224
chr2:37389849-37389850(-) m6A CDS//exon//intron       25683224
chr2:37389875-37389876(-) m6A CDS//exon       25683224
chr2:37389893-37389894(-) m6A exon//intron       25683224
chr2:37389912-37389913(-) m6A exon//intron       25683224//22608085
chr2:37409501-37409502(-) m6A CDS       25683224//22608085
chr2:37409521-37409522(-) m6A CDS       25683224//22608085
chr2:37409532-37409533(-) m6A CDS       25683224//22608085
chr2:37409600-37409601(-) m6A CDS//exon       25683224//22608085
chr2:37409617-37409618(-) m6A CDS//exon       25683224//22608085
chr2:37409651-37409652(-) m6A CDS//exon       25683224
chr2:37422872-37422873(-) m6A 5'UTR       25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Rc3h2
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m01-1
Interactor2: Rc3h2

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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