Basic Information:

  VIRBase ID:  

VHID00588969

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-1:  MIMAT0005533          Cpsf7:  NM_001362450     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m01-1	Cpsf7
miRBase Accession/Entrez ID	MIMAT0005533	269061
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	5730453I16Rik//AL022757//C330017N18Rik

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Cpsf7	chr19:10603553(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Cpsf7	chr19:10525256-10525257(+) m6A 5'UTR       25569111 chr19:10525299-10525300(+) m6A 5'UTR       24981863//25569111 chr19:10531875-10531876(+) m6A CDS       24981863//22608085 chr19:10531911-10531912(+) m6A CDS       24981863//22608085 chr19:10531916-10531917(+) m6A CDS       24981863//22608085 chr19:10531924-10531925(+) m6A CDS       24981863//22608085 chr19:10536863-10536864(+) m6A CDS       25569111//22608085 chr19:10539642-10539643(+) m6A CDS       24981863//25569111//22608085 chr19:10539671-10539672(+) m6A CDS       24981863//25569111//22608085 chr19:10539727-10539728(+) m6A CDS       24981863//25569111//22608085 chr19:10540686-10540687(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr19:10540745-10540746(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr19:10540763-10540764(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr19:10540793-10540794(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr19:10540800-10540801(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr19:10540809-10540810(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr19:10540829-10540830(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr19:10545723-10545724(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr19:10545749-10545750(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr19:10545814-10545815(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr19:10545890-10545891(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr19:10545898-10545899(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr19:10545925-10545926(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr19:10545956-10545957(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr19:10545988-10545989(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr19:10546039-10546040(+) m6A 3'UTR       25683224//25456834//24981863//25412662//25569111 chr19:10546158-10546159(+) m6A 3'UTR       24981863//25569111 chr19:10546216-10546217(+) m6A 3'UTR       24981863//25569111 chr19:10546225-10546226(+) m6A 3'UTR       24981863//25569111 chr19:10546247-10546248(+) m6A 3'UTR       24981863//25569111 chr19:10546348-10546349(+) m6A 3'UTR       24981863//25569111 chr19:10546368-10546369(+) m6A 3'UTR       24981863//25569111 chr19:10547094-10547095(+) m6A 3'UTR       24981863//22608085 chr19:10547114-10547115(+) m6A 3'UTR       24981863//22608085 chr19:10547154-10547155(+) m6A 3'UTR       24981863//25456834//22608085 chr19:10547165-10547166(+) m6A 3'UTR       24981863//25456834//22608085 chr19:10547207-10547208(+) m6A 3'UTR       24981863//25456834//25569111 chr19:10547243-10547244(+) m6A 3'UTR       24981863//25456834//25569111 chr19:10547262-10547263(+) m6A 3'UTR       24981863//25456834//25569111 chr19:10547268-10547269(+) m6A 3'UTR       24981863//25456834//25569111 chr19:10547302-10547303(+) m6A 3'UTR       24981863//25456834//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Cpsf7	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m01-1
Interactor2: Cpsf7

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar