Basic Information:

  VIRBase ID:  

VHID00588943

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-1:  MIMAT0005533          Zkscan17:  NM_001291014     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m01-1	Zkscan17
miRBase Accession/Entrez ID	MIMAT0005533	268417
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	Ni//Nizp1//Zfp49//Zfp496//Znf496

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Zkscan17	chr11:59485543-59485544(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr11:59485574-59485575(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr11:59485628-59485629(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr11:59485636-59485637(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr11:59485645-59485646(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr11:59485657-59485658(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr11:59485781-59485782(-) m6A 3'UTR       25683224//25456834//24981863//25569111 chr11:59485844-59485845(-) m6A 3'UTR       25683224//24981863//25569111 chr11:59485859-59485860(-) m6A 3'UTR       25683224//25569111 chr11:59486004-59486005(-) m6A 3'UTR       24981863//25569111 chr11:59486061-59486062(-) m6A 3'UTR       24981863//25569111 chr11:59486085-59486086(-) m6A 3'UTR       24981863//25569111 chr11:59486267-59486268(-) m6A 3'UTR       25569111 chr11:59486418-59486419(-) m6A 3'UTR       25569111 chr11:59486887-59486888(-) m6A 3'UTR       24981863//25569111 chr11:59486913-59486914(-) m6A 3'UTR       24981863//25456834//25569111 chr11:59487022-59487023(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr11:59487148-59487149(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:59487181-59487182(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:59487203-59487204(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:59487212-59487213(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:59487252-59487253(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:59487319-59487320(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:59487463-59487464(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr11:59487483-59487484(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr11:59487597-59487598(-) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr11:59487625-59487626(-) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr11:59487681-59487682(-) m6A CDS       25683224//25412662//24981863//25569111 chr11:59487732-59487733(-) m6A CDS       25683224//25412662//24981863//25569111 chr11:59487780-59487781(-) m6A CDS       25683224//25412662//24981863//25569111 chr11:59493208-59493209(-) m6A CDS       25683224//25412662//24981863 chr11:59493737-59493738(-) m6A CDS       25683224 chr11:59503031-59503032(-) m6A 5'UTR//CDS//exon       25683224//25412662 chr11:59503038-59503039(-) m6A 5'UTR//CDS//exon       25683224//25412662 chr11:59503083-59503084(-) m6A 5'UTR//CDS//exon       25683224//25412662 chr11:59503395-59503396(-) m6A CDS//exon//intron       25683224//25412662 chr11:59503690-59503691(-) m6A 5'UTR//CDS//exon       25412662 chr11:59504161-59504162(-) m6A 5'UTR//exon       25412662//24981863 chr11:59504230-59504231(-) m6A 5'UTR//exon       24981863 chr11:59504239-59504240(-) m6A 5'UTR//exon       24981863 chr11:59505839-59505840(-) m6A 5'UTR//exon       25412662//24981863//25569111 chr11:59505850-59505851(-) m6A 5'UTR//exon       25412662//24981863//25569111 chr11:59505889-59505890(-) m6A 5'UTR//exon       25412662//24981863//25569111 chr11:59505910-59505911(-) m6A 5'UTR//exon       25412662//24981863//25569111 chr11:59506282-59506283(-) m6A 5'UTR//intron       25683224//25412662//24981863//25569111 chr11:59506299-59506300(-) m6A 5'UTR//intron       25683224//25412662//24981863//25569111 chr11:59506498-59506499(-) m6A 5'UTR//intron       25412662//24981863 chr11:59506580-59506581(-) m6A 5'UTR//intron       25412662//24981863 chr11:59526502-59526503(-) m6A exon       24981863 chr11:59526549-59526550(-) m6A exon       24981863 chr11:59526556-59526557(-) m6A exon       24981863 chr11:59526593-59526594(-) m6A exon       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Zkscan17	Cytoplasm Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m01-1
Interactor2: Zkscan17

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar