Detail Information

Basic Information:


  VIRBase ID:  

VHID00588731

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-1:           Coro2b:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m01-1 Coro2b
miRBase
Accession/Entrez ID		 MIMAT0005533 235431
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - CLIPINC//E130012P22Rik

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR Coro2b
chr9:62270630(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED Coro2b
chr9:62422823(-) A-I intron -    22524474

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Coro2b
chr9:62419620-62419621(-) m6A 3'UTR       25683224//24981863//25412662//25569111//22608085
chr9:62419755-62419756(-) m6A 3'UTR       25683224//25412662//24981863//25569111
chr9:62419782-62419783(-) m6A 3'UTR       25683224//25412662//24981863
chr9:62419817-62419818(-) m6A 3'UTR       25412662//24981863
chr9:62419852-62419853(-) m6A 3'UTR       24981863
chr9:62420701-62420702(-) m6A 3'UTR       24981863//25412662
chr9:62420832-62420833(-) m6A 3'UTR       25683224//25412662//24981863//25569111//22608085
chr9:62420865-62420866(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr9:62420881-62420882(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr9:62420947-62420948(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr9:62421098-62421099(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr9:62421119-62421120(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr9:62421131-62421132(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr9:62421144-62421145(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr9:62421155-62421156(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr9:62421182-62421183(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr9:62421288-62421289(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr9:62421309-62421310(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085
chr9:62421317-62421318(-) m6A CDS       25683224//25456834//25412662//24981863//25569111
chr9:62421345-62421346(-) m6A CDS       25683224//25456834//25412662//24981863//25569111
chr9:62425624-62425625(-) m6A 3'UTR//intron       25683224//24981863
chr9:62429011-62429012(-) m6A CDS//exon       25412662//22608085
chr9:62429229-62429230(-) m6A CDS//exon       25412662//22608085
chr9:62429246-62429247(-) m6A CDS//exon       25412662//22608085
chr9:62429253-62429254(-) m6A CDS       25412662//22608085
chr9:62429325-62429326(-) m6A CDS       25412662//22608085
chr9:62429334-62429335(-) m6A CDS       25412662//22608085
chr9:62431325-62431326(-) m6A CDS       25412662//22608085
chr9:62431347-62431348(-) m6A CDS       25412662//22608085
chr9:62432434-62432435(-) m6A CDS       25683224//22608085
chr9:62432465-62432466(-) m6A 5'UTR//CDS       25683224//22608085
chr9:62449113-62449114(-) m6A 5'UTR//intron       25683224//22608085
chr9:62454535-62454536(-) m6A CDS//exon       25683224//22608085
chr9:62536910-62536911(-) m6A 5'UTR//exon       25412662
chr9:62536926-62536927(-) m6A 5'UTR//exon       25412662//25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Coro2b
Cytoplasm Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m01-1
Interactor2: Coro2b

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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