Basic Information:

  VIRBase ID:  

VHID00588694

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-1:  MIMAT0005533          Tubgcp5:  NM_146190     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m01-1	Tubgcp5
miRBase Accession/Entrez ID	MIMAT0005533	233276
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	B130010C12Rik//GCP//GCP5//mKIAA1899

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Tubgcp5	chr7:55794228-55794229(+) m6A CDS//exon       24981863//25569111 chr7:55794294-55794295(+) m6A CDS//exon       25569111 chr7:55794318-55794319(+) m6A CDS//exon       25569111 chr7:55800641-55800642(+) m6A CDS//exon       24981863 chr7:55800683-55800684(+) m6A CDS//exon       24981863 chr7:55800701-55800702(+) m6A CDS//exon//intron       24981863 chr7:55800706-55800707(+) m6A CDS//exon//intron       24981863 chr7:55800725-55800726(+) m6A CDS//exon//intron       24981863 chr7:55814888-55814889(+) m6A 3'UTR//CDS//exon       24981863 chr7:55814932-55814933(+) m6A 3'UTR//CDS//exon       24981863 chr7:55814945-55814946(+) m6A 3'UTR//CDS//exon       24981863//22608085 chr7:55815003-55815004(+) m6A 3'UTR//CDS//exon       24981863//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Tubgcp5	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m01-1
Interactor2: Tubgcp5

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar