Basic Information:

  VIRBase ID:  

VHID00588514

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-1:  MIMAT0005533          Rprd1a:  NM_001360807     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m01-1	Rprd1a
miRBase Accession/Entrez ID	MIMAT0005533	225283
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	C77387//mKIAA4077

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Rprd1a	chr18:24657929(-) A-I      intronic chr18:24657946(-) A-I      intronic chr18:24658685(-) A-I      intronic chr18:24663230(-) A-I      intronic chr18:24658659(-) A-I      intronic chr18:24657963(-) A-I      intronic chr18:24658708(-) A-I      intronic chr18:24657967(-) A-I      intronic chr18:24657981(-) A-I      intronic chr18:24658660(-) A-I      intronic chr18:24663216(-) A-I      intronic chr18:24658656(-) A-I      intronic chr18:24658676(-) A-I      intronic chr18:24657940(-) A-I      intronic chr18:24658709(-) A-I      intronic chr18:24657947(-) A-I      intronic chr18:24657942(-) A-I      intronic chr18:24657984(-) A-I      intronic chr18:24657959(-) A-I      intronic chr18:24657921(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Rprd1a	chr18:24499420(-) A-I intron -    22524474 chr18:24499428(-) A-I intron -    22524474 chr18:24499439(-) A-I intron -    22524474 chr18:24499441(-) A-I intron -    22524474 chr18:24499445(-) A-I intron -    22524474 chr18:24499446(-) A-I intron -    22524474 chr18:24499458(-) A-I intron -    22524474 chr18:24499462(-) A-I intron -    22524474 chr18:24499466(-) A-I intron -    22524474 chr18:24499480(-) A-I intron -    22524474 chr18:24499483(-) A-I intron -    22524474 chr18:24500155(-) A-I intron -    22524474 chr18:24500158(-) A-I intron -    22524474 chr18:24500159(-) A-I intron -    22524474 chr18:24500175(-) A-I intron -    22524474 chr18:24500184(-) A-I intron -    22524474 chr18:24500207(-) A-I intron -    22524474 chr18:24500208(-) A-I intron -    22524474 chr18:24504715(-) A-I intron -    22524474 chr18:24504729(-) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Rprd1a	chr18:24487743-24487744(-) m6A 3'UTR       24981863//25569111 chr18:24487781-24487782(-) m6A 3'UTR       25456834//24981863//25569111 chr18:24487803-24487804(-) m6A 3'UTR       25456834//24981863//25569111 chr18:24487965-24487966(-) m6A 3'UTR       25456834//24981863 chr18:24488138-24488139(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr18:24488146-24488147(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr18:24488156-24488157(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr18:24488185-24488186(-) m6A CDS       25683224//25456834//24981863//25412662//25569111//22608085 chr18:24488200-24488201(-) m6A CDS       25683224//25456834//24981863//25412662//25569111//22608085 chr18:24488286-24488287(-) m6A CDS       25412662//24981863//25569111//22608085 chr18:24506845-24506846(-) m6A CDS       24981863//25569111 chr18:24506935-24506936(-) m6A CDS       24981863//25569111 chr18:24508064-24508065(-) m6A CDS       24981863//22608085 chr18:24508271-24508272(-) m6A CDS       24981863//22608085 chr18:24509867-24509868(-) m6A CDS       25412662//22608085 chr18:24509917-24509918(-) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr18:24529961-24529962(-) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr18:24529993-24529994(-) m6A CDS       25683224//25412662//24981863//25569111//22608085 chr18:24530032-24530033(-) m1A CDS       26863196 chr18:24530193-24530194(-) m6A 5'UTR       24981863//25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Rprd1a	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m01-1
Interactor2: Rprd1a

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar