Detail Information

Basic Information:


  VIRBase ID:  

VHID00588136

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-1:           Erc1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol mcmv-miR-m01-1 Erc1
miRBase
Accession/Entrez ID		 MIMAT0005533 111173
Organism Murid betaherpesvirus 1 Mus musculus
Category miRNA mRNA
Alias - 4930404L01Rik//5033405M01Rik//9630025C19Rik//B430107L16Rik//CAST2//Elk//ELKS//Elks1//mKIAA1081//RAB//RAB6//Rab6ip2//RAB6IP2A//RAB6IP2B

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Erc1
chr6:119570907-119570908(-) Y 3'UTR//exon       26075521
chr6:119571070-119571071(-) m6A 3'UTR       25683224
chr6:119571683-119571684(-) m6A 3'UTR       25683224
chr6:119571721-119571722(-) m6A 3'UTR       25683224
chr6:119571818-119571819(-) m6A 3'UTR       25683224
chr6:119571855-119571856(-) m6A 3'UTR       -
chr6:119571869-119571870(-) m6A 3'UTR       -
chr6:119572127-119572128(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085//22575960
chr6:119572136-119572137(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085//22575960
chr6:119572170-119572171(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085//22575960
chr6:119572197-119572198(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960
chr6:119572225-119572226(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960
chr6:119572242-119572243(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22608085//22575960
chr6:119572402-119572403(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085//22575960
chr6:119572496-119572497(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960
chr6:119572537-119572538(-) m6A 3'UTR       25683224//25456834//24981863//25412662//25569111//22608085//22575960
chr6:119572701-119572702(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr6:119572706-119572707(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr6:119572712-119572713(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr6:119572725-119572726(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085
chr6:119572870-119572871(-) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960
chr6:119572920-119572921(-) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085//22575960
chr6:119573025-119573026(-) m6A 3'UTR       25683224//25456834//24981863//25569111
chr6:119573916-119573917(-) Y 3'UTR//exon       26075521
chr6:119574018-119574019(-) m6A 3'UTR       -
chr6:119574142-119574143(-) m6A 3'UTR       24981863
chr6:119574336-119574337(-) m6A 3'UTR       25569111
chr6:119574565-119574566(-) m6A 3'UTR       24981863
chr6:119574784-119574785(-) m6A 3'UTR       25683224//24981863//25456834//25569111//22608085
chr6:119575253-119575254(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr6:119575385-119575386(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085
chr6:119575440-119575441(-) m6A 3'UTR       25683224//25412662//24981863//25569111//22608085
chr6:119575544-119575545(-) m6A 3'UTR       25683224//25412662//24981863//25569111
chr6:119575572-119575573(-) m6A 3'UTR       25683224//25412662//24981863//25569111
chr6:119575581-119575582(-) m6A 3'UTR       25683224//25412662//24981863//25569111
chr6:119575657-119575658(-) m6A 3'UTR//CDS       25683224//25412662//24981863//25569111
chr6:119575730-119575731(-) m6A 3'UTR//CDS       25683224//25412662//24981863//25569111
chr6:119594865-119594866(-) m6A 3'UTR//CDS       25683224//24981863//25569111
chr6:119594884-119594885(-) m6A 3'UTR//CDS       25683224//24981863//25456834//25569111
chr6:119594913-119594914(-) m6A 3'UTR//CDS       25683224//24981863//25456834//25569111
chr6:119594952-119594953(-) m6A 3'UTR//CDS       24981863//25569111
chr6:119617281-119617282(-) m6A exon//intron       24981863
chr6:119617296-119617297(-) m6A exon//intron       24981863
chr6:119617345-119617346(-) m6A exon//intron       24981863
chr6:119620304-119620305(-) m6A exon//intron       24981863
chr6:119620314-119620315(-) m6A CDS//exon       24981863
chr6:119620325-119620326(-) m6A CDS//exon       24981863
chr6:119620332-119620333(-) m6A CDS//exon       24981863
chr6:119620408-119620409(-) m6A CDS//exon       24981863
chr6:119620427-119620428(-) m6A exon//intron       24981863
chr6:119630608-119630609(-) m6A CDS       25412662//24981863
chr6:119630630-119630631(-) m6A CDS       25683224//25412662//24981863
chr6:119630667-119630668(-) m6A CDS       25683224//25412662//24981863
chr6:119694596-119694597(-) m6A CDS       25683224//25412662
chr6:119694689-119694690(-) m6A CDS       25683224//25412662//24981863//22608085
chr6:119713682-119713683(-) m6A CDS//intron       25683224//25412662//24981863//22608085
chr6:119713696-119713697(-) m6A CDS//intron       25683224//25412662//24981863//22608085
chr6:119722203-119722204(-) m6A CDS//exon       25683224//25456834//24981863
chr6:119722259-119722260(-) m6A CDS//exon       25683224//25456834//24981863
chr6:119722268-119722269(-) m6A CDS//exon       25683224//25456834//24981863
chr6:119722296-119722297(-) m6A CDS//exon       25683224//25456834//24981863
chr6:119743372-119743373(-) m6A CDS//exon       25456834//24981863
chr6:119749902-119749903(-) m6A CDS//exon       25412662//24981863
chr6:119749916-119749917(-) m6A CDS//exon       25412662//24981863//25569111
chr6:119749927-119749928(-) m6A CDS//exon       25412662//24981863//25569111
chr6:119751215-119751216(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr6:119751248-119751249(-) m6A CDS//exon       25683224//25412662//24981863//25456834//25569111
chr6:119751257-119751258(-) m6A CDS//exon       25683224//25412662//24981863//25456834//25569111
chr6:119751305-119751306(-) m6A CDS//exon       25683224//25412662//24981863//25456834//25569111
chr6:119751333-119751334(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr6:119753298-119753299(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr6:119753313-119753314(-) m6A CDS//exon       25683224//25412662//24981863//25569111
chr6:119753378-119753379(-) m6A CDS//exon       25683224//24981863
chr6:119761189-119761190(-) m6A CDS//exon       25683224//24981863
chr6:119761256-119761257(-) m6A CDS//exon       25683224//24981863
chr6:119761274-119761275(-) m6A CDS//exon       25683224//24981863
chr6:119772763-119772764(-) m6A 3'UTR//intron       25683224
chr6:119773738-119773739(-) m6A CDS//exon//intron       24981863
chr6:119773809-119773810(-) m6A CDS//exon//intron       24981863
chr6:119773821-119773822(-) m6A CDS//exon//intron       24981863
chr6:119773831-119773832(-) m6A CDS//exon//intron       24981863
chr6:119773843-119773844(-) m6A CDS//exon//intron       24981863
chr6:119773866-119773867(-) m6A CDS//exon//intron       25683224//24981863
chr6:119773880-119773881(-) m6A CDS//exon//intron       25683224//24981863
chr6:119773886-119773887(-) m6A CDS//exon//intron       25683224//24981863
chr6:119779594-119779595(-) m6A CDS//exon//intron       24981863
chr6:119783405-119783406(-) m6A CDS//exon//intron       24981863
chr6:119783420-119783421(-) m6A CDS//exon//intron       25683224//25412662//24981863//25569111
chr6:119797006-119797007(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr6:119797032-119797033(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr6:119797091-119797092(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr6:119797103-119797104(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr6:119797133-119797134(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr6:119797195-119797196(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr6:119797232-119797233(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr6:119797270-119797271(-) m6A CDS//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr6:119823993-119823994(-) m6A exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr6:119824015-119824016(-) m6A exon//intron       25683224//25456834//25412662//24981863//25569111//22608085
chr6:119824027-119824028(-) m6A exon//intron       25683224//25456834//24981863//25412662//25569111//22608085
chr6:119824044-119824045(-) m6A exon//intron       25683224//25456834//24981863//25412662//25569111//22608085
chr6:119824334-119824335(-) m6A exon//intron       24981863//25569111//22608085
chr6:119824389-119824390(-) m6A CDS//exon       24981863//25569111//22608085
chr6:119824492-119824493(-) m6A CDS//exon       25683224//24981863//25569111
chr6:119824588-119824589(-) m6A CDS//exon       25683224//24981863//25456834//25569111//22608085
chr6:119824673-119824674(-) m6A CDS//exon//intron       25683224//25456834//24981863//25569111//22608085
chr6:119824804-119824805(-) m6A CDS//exon//intron       25683224//25456834//24981863//25569111//26404942//22608085//22575960
chr6:119824897-119824898(-) m6A CDS//exon//intron       25683224//25456834//24981863//25569111//22608085
chr6:119824923-119824924(-) m6A CDS//exon//intron       25683224//25456834//24981863//25569111//22608085
chr6:119824951-119824952(-) m6A CDS//exon//intron       25683224//25456834//24981863//25569111//22608085
chr6:119825018-119825019(-) m6A CDS//exon//intron       25683224//25456834//24981863//25569111//22608085
chr6:119825121-119825122(-) m6A 5'UTR//exon//intron       25683224//25456834//24981863//25569111
chr6:119825178-119825179(-) m6A 5'UTR//exon//intron       25456834//25569111

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate Erc1
Nucleus Neuroblastoma cell line (N2A)     22406755
Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):


Interactor1: mcmv-miR-m01-1
Interactor2: Erc1

Evidence Support:


Prediction-Evidence cRep//Rep
Support Database RepTar

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