Basic Information:

  VIRBase ID:  

VHID00587947

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-1:  MIMAT0005533          Phactr4:  NM_001161797     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m01-1	Phactr4
miRBase Accession/Entrez ID	MIMAT0005533	100169
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	3110001B12Rik//AI527228//AW495572//C330013F19Rik//mKIAA4120//N28169

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Phactr4	chr4:132357401-132357402(-) m6A 3'UTR       24981863//25456834//25569111 chr4:132357418-132357419(-) m6A 3'UTR       24981863//25569111 chr4:132357460-132357461(-) m6A 3'UTR       24981863//25569111 chr4:132357697-132357698(-) m6A 3'UTR       24981863//25569111 chr4:132357798-132357799(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr4:132357845-132357846(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr4:132357853-132357854(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr4:132357965-132357966(-) m6A 3'UTR       25456834//24981863//25569111 chr4:132358052-132358053(-) m6A 3'UTR       24981863//25569111 chr4:132358090-132358091(-) m6A 3'UTR       24981863//25569111 chr4:132358239-132358240(-) m6A 3'UTR       25412662 chr4:132361688-132361689(-) m6A CDS//exon       24981863 chr4:132365585-132365586(-) m6A CDS//exon       25412662//24981863//25569111 chr4:132365614-132365615(-) m6A CDS//exon       25412662//24981863//25569111 chr4:132367913-132367914(-) m6A CDS//exon       25412662//24981863//25569111 chr4:132367980-132367981(-) m6A CDS//exon       25412662//24981863//25569111 chr4:132367987-132367988(-) m6A CDS//exon       25412662//24981863//25569111 chr4:132367996-132367997(-) m6A CDS//exon       25412662//24981863//25569111 chr4:132368024-132368025(-) m6A CDS//exon       24981863//25569111 chr4:132370772-132370773(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:132370798-132370799(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr4:132370853-132370854(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr4:132370947-132370948(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:132370967-132370968(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:132370991-132370992(-) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:132371076-132371077(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:132371098-132371099(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:132371115-132371116(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:132377196-132377197(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:132377210-132377211(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:132377293-132377294(-) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr4:132377344-132377345(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:132377355-132377356(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr4:132377471-132377472(-) m6A CDS       25683224//25456834//24981863//25569111 chr4:132378408-132378409(-) m6A CDS       25683224//24981863//25569111 chr4:132378439-132378440(-) m6A CDS       25683224//24981863//25569111 chr4:132383292-132383293(-) m6A CDS//intron       25683224//24981863 chr4:132383321-132383322(-) m6A CDS//intron       25683224//24981863 chr4:132383333-132383334(-) m6A CDS//intron       25683224//24981863 chr4:132386900-132386901(-) m6A CDS       25683224//24981863//25569111 chr4:132387004-132387005(-) m6A CDS       25683224//24981863//25569111 chr4:132387022-132387023(-) m6A CDS       25683224//24981863//25569111 chr4:132387040-132387041(-) m6A CDS       25683224//24981863//25569111 chr4:132397973-132397974(-) m6A CDS//intron       25683224//24981863//25569111 chr4:132398008-132398009(-) m6A 5'UTR//intron       25683224//25569111 chr4:132398137-132398138(-) m6A 5'UTR//intron       24981863 chr4:132398143-132398144(-) m6A 5'UTR//intron       24981863//25569111 chr4:132413077-132413078(-) m6A CDS       24981863//25569111 chr4:132413120-132413121(-) m6A 5'UTR       24981863//25412662//25569111 chr4:132422368-132422369(-) m6A 5'UTR       24981863//25412662//25569111 chr4:132422402-132422403(-) m6A 5'UTR       24981863//25569111

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Phactr4	Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m01-1
Interactor2: Phactr4

Evidence Support:

Prediction-Evidence	cRep//Rep
Support Database	RepTar