Basic Information:

  VIRBase ID:  

VHID00586819

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-1:  MIMAT0005533          Rbm38:  NM_019547     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m01-1	Rbm38
miRBase Accession/Entrez ID	MIMAT0005533	56190
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	Rn//Rnpc1//Seb//Seb4//Seb4l

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Rbm38	chr2:173021967-173021968(+) m6A 5'UTR//exon       25412662//25569111 chr2:173021979-173021980(+) m6A 5'UTR//exon       25412662//25569111 chr2:173021997-173021998(+) m6A 5'UTR//exon       25412662//25569111 chr2:173022121-173022122(+) m6A CDS//exon       25412662//25569111 chr2:173022208-173022209(+) m6A CDS//exon       25412662 chr2:173022243-173022244(+) m6A CDS//exon       25412662 chr2:173022513-173022514(+) m6A exon//intron       25683224 chr2:173022533-173022534(+) m6A exon//intron       25683224 chr2:173022605-173022606(+) m6A exon//intron       25683224 chr2:173033965-173033966(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr2:173034051-173034052(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111//22575960 chr2:173034158-173034159(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111 chr2:173034174-173034175(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111 chr2:173034181-173034182(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111 chr2:173034200-173034201(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111 chr2:173034230-173034231(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111 chr2:173034300-173034301(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111 chr2:173034617-173034618(+) m6A 3'UTR//exon       25683224 chr2:173034652-173034653(+) m6A 3'UTR//exon       25683224 chr2:173034712-173034713(+) m6A 3'UTR//exon       25683224

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	Rbm38	Cytoplasm Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m01-1
Interactor2: Rbm38

Evidence Support:

Prediction-Evidence	Rep
Support Database	RepTar