Basic Information:

  VIRBase ID:  

VHID00586614

  Virus:  

Murid betaherpesvirus 1

  Host:  

Mus musculus

  Confidence Score:  

0.1828

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      mcmv-miR-m01-1:  MIMAT0005533          Trappc3:  NM_013718     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mcmv-miR-m01-1	Trappc3
miRBase Accession/Entrez ID	MIMAT0005533	27096
Organism	Murid betaherpesvirus 1	Mus musculus
Category	miRNA	mRNA
Alias	-	1110058K12Rik//AI835942//AU019197//Bet3

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Trappc3	chr4:125948554(+) A-I      intronic chr4:125944677(+) A-I      intronic chr4:125947548(+) A-I      intronic chr4:125948545(+) A-I      intronic chr4:125947547(+) A-I      intronic chr4:125942654(+) A-I      intronic chr4:125943690(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Trappc3	chr4:126265410(+) A-I intron -    22524474 chr4:126266446(+) A-I intron -    22524474 chr4:126267433(+) A-I intron -    22524474 chr4:126270303(+) A-I intron -    22524474 chr4:126270304(+) A-I intron -    22524474 chr4:126271301(+) A-I intron -    22524474 chr4:126271310(+) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Trappc3	chr4:126262329-126262330(+) m6A 5'UTR       25412662//24981863 chr4:126262511-126262512(+) m6A CDS//exon       25683224//25412662//24981863//25456834//25569111 chr4:126272732-126272733(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr4:126272756-126272757(+) m6A CDS//exon       25683224//25412662//24981863//25569111//22608085 chr4:126272768-126272769(+) m6A CDS//exon       25683224//25412662//25569111//22608085 chr4:126273053-126273054(+) m6A CDS//exon       25683224//22608085 chr4:126273119-126273120(+) m6A exon//intron       25683224//22608085 chr4:126273179-126273180(+) m6A exon//intron       25683224 chr4:126273974-126273975(+) m6A CDS       25569111//22608085 chr4:126273989-126273990(+) m6A CDS       25569111//22608085 chr4:126275175-126275176(+) m6A CDS       25683224//25456834//24981863//25569111//22608085 chr4:126275235-126275236(+) m6A CDS       25683224//25456834//24981863//25569111//26404942//22608085 chr4:126275272-126275273(+) m6A 3'UTR       25683224//25456834//24981863//25569111//26404942//22608085 chr4:126275339-126275340(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr4:126275355-126275356(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr4:126275412-126275413(+) m6A 3'UTR       25456834//24981863//25569111//22608085//22575960 chr4:126275508-126275509(+) m6A 3'UTR       25456834//24981863//25569111//22608085//22575960 chr4:126275523-126275524(+) m6A 3'UTR       25456834//24981863//25569111//22608085

Interaction Network (The top 100 interactions):

Interactor1: mcmv-miR-m01-1
Interactor2: Trappc3

Evidence Support:

Prediction-Evidence	cRep
Support Database	RepTar