Detail Information

Basic Information:


  VIRBase ID:  

VHID00584817

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B22-3p:           WDR27:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B22-3p WDR27
miRBase
Accession/Entrez ID		 MIMAT0031773 253769
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR WDR27
chr6:169917195(-) A-I      intronic
chr6:169919633(-) A-I      intronic
chr6:169917407(-) A-I      intronic
chr6:169917372(-) A-I      intronic
chr6:169917221(-) A-I      intronic
chr6:169917214(-) A-I      intronic
chr6:169917354(-) A-I      intronic
chr6:169917216(-) A-I      intronic
chr6:169917343(-) A-I      intronic
chr6:169919635(-) A-I      intronic
chr6:169917215(-) A-I      intronic
chr6:169917288(-) A-I      intronic
chr6:169987594(-) A-I      intronic
chr6:169951721(-) A-I      intronic
chr6:169951709(-) A-I      intronic
chr6:169951711(-) A-I      intronic
chr6:170017609(-) A-I      intronic
chr6:169982175(-) A-I      intronic
chr6:170017603(-) A-I      intronic
chr6:169951668(-) A-I      intronic
chr6:169970917(-) A-I      intronic
chr6:169970777(-) A-I      intronic
chr6:169951750(-) A-I      intronic
chr6:169925512(-) A-I      intronic
chr6:169925519(-) A-I      intronic
chr6:169950710(-) A-I      intronic
chr6:169950712(-) A-I      intronic
chr6:169951648(-) A-I      intronic
chr6:169951659(-) A-I      intronic
chr6:169951011(-) A-I      intronic
chr6:169951733(-) A-I      intronic
chr6:170017728(-) A-I      intronic
chr6:169976780(-) A-I      intronic
chr6:169886683(-) A-I      intronic
chr6:169951781(-) A-I      intronic
chr6:169965986(-) A-I      intronic
chr6:169940578(-) A-I      intronic
chr6:170058957(-) A-I      intronic
chr6:169982343(-) A-I      intronic
chr6:169976689(-) A-I      intronic
chr6:169976691(-) A-I      intronic
chr6:170055948(-) A-I      intronic
chr6:169940719(-) A-I      intronic
chr6:169951058(-) A-I      intronic
chr6:169862372(-) A-I      intronic
chr6:169970762(-) A-I      intronic
chr6:169945679(-) A-I      intronic
chr6:169862374(-) A-I      intronic
chr6:169970759(-) A-I      intronic
chr6:169965995(-) A-I      intronic
chr6:169976777(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED WDR27
chr6:170065894(-) A-I intron -    21960545
chr6:169917145(-) A-G intron -    22484847
chr6:169917339(-) A-G intron -    22484847
chr6:169917344(-) A-G intron -    22484847
chr6:169945760(-) A-G intron -    22484847
chr6:169951781(-) A-G intron -    22484847
chr6:169965995(-) A-G intron -    22484847
chr6:169970759(-) A-G intron -    22484847
chr6:169970762(-) A-G intron -    22484847
chr6:169976862(-) G-T intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase WDR27
chr6:169857393-169857394(-) m6A 3'UTR//exon       27773535
chr6:169857413-169857414(-) m6A 3'UTR//exon       27773535
chr6:169958523-169958524(-) m6A exon//intron       27773535//22608085
chr6:169958559-169958560(-) m6A exon//intron       27773535//22608085
chr6:169958579-169958580(-) m6A exon//intron       25456834//24981863//27773535//22575960//22608085
chr6:169958697-169958698(-) m6A exon//intron       24284625//25456834//27773535//27371828//22575960//22608085
chr6:169958731-169958732(-) m6A exon//intron       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr6:169958788-169958789(-) m6A exon//intron       24284625//27773535//22608085
chr6:169958809-169958810(-) m6A exon//intron       27773535//22608085
chr6:169958850-169958851(-) m6A exon//intron       27773535//22608085
chr6:169958926-169958927(-) m6A exon//intron       27773535//22608085
chr6:169959051-169959052(-) m6A exon//intron       24981863//27773535//22608085
chr6:169959143-169959144(-) m6A exon//intron       24981863//27773535//22608085
chr6:169959151-169959152(-) m6A exon//intron       24981863//27773535//22608085
chr6:169959156-169959157(-) m6A exon//intron       24981863//27773535//22608085
chr6:169959221-169959222(-) m6A exon//intron       24981863//27773535//22608085
chr6:169959230-169959231(-) m6A exon//intron       24981863//27773535//22608085
chr6:169959372-169959373(-) m6A exon//intron       27773535//22608085
chr6:169959399-169959400(-) m6A exon//intron       27773535//22608085
chr6:169959692-169959693(-) m6A exon//intron       24981863
chr6:169959730-169959731(-) m6A exon//intron       24981863//27773535
chr6:169959740-169959741(-) m6A exon//intron       24981863//27773535
chr6:170049348-170049349(-) m6A CDS//exon       -
chr6:170052082-170052083(-) m6A CDS//exon       27773535
chr6:170057311-170057312(-) Cm intron       -
chr6:170057902-170057903(-) m6A exon//intron       27773535
chr6:170057919-170057920(-) m6A exon//intron       27773535
chr6:170057960-170057961(-) m6A exon//intron       27773535
chr6:170058054-170058055(-) m6A exon//intron       27773535
chr6:170058080-170058081(-) m6A exon//intron       27773535
chr6:170058128-170058129(-) m6A exon//intron       27773535
chr6:170064306-170064307(-) m6A CDS//exon       24284625//24981863//22608085
chr6:170064312-170064313(-) m6A CDS//exon       24284625//24981863//22608085
chr6:170064355-170064356(-) m6A CDS//exon       24284625//24981863//22608085
chr6:170064425-170064426(-) m6A exon//intron       24284625//24209618//24981863//27773536//22608085
chr6:170064523-170064524(-) m6A exon//intron       24284625//24209618//27773536//22608085
chr6:170064875-170064876(-) m6A exon//intron       24209618
chr6:170064901-170064902(-) m6A exon//intron       24209618//25456834
chr6:170065297-170065298(-) m6A exon//intron       24284625//25456834//22608085
chr6:170065470-170065471(-) m6A exon//intron       24284625//24981863//27773535//22608085
chr6:170065545-170065546(-) m6A exon//intron       24284625//24981863//27773535//22608085
chr6:170065575-170065576(-) m6A exon//intron       24981863//22608085
chr6:170067275-170067276(-) m6A CDS//exon//intron       24284625
chr6:170068090-170068091(-) m6A CDS//exon//intron       24284625//25456834//24981863//27371828//22575960//22608085
chr6:170068190-170068191(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr6:170068780-170068781(-) m6A exon//intron       24284625//24981863//27773535//22608085
chr6:170068848-170068849(-) m6A exon//intron       24284625//22608085
chr6:170069621-170069622(-) m6A exon//intron       24284625//27773535
chr6:170069671-170069672(-) m6A exon//intron       27773535
chr6:170069719-170069720(-) m6A exon//intron       27773535
chr6:170071900-170071901(-) m6A exon//intron       -
chr6:170071968-170071969(-) m6A exon//intron       -
chr6:170088934-170088935(-) m6A CDS//exon       24284625
chr6:170088948-170088949(-) m6A CDS//exon       24284625
chr6:170088953-170088954(-) m6A CDS//exon       24284625
chr6:170088976-170088977(-) m6A CDS//exon       24284625
chr6:170101682-170101683(-) m6A 5'UTR//exon       24284625
chr6:170101818-170101819(-) m6A 5'UTR       24284625//27773536
chr6:170101833-170101834(-) m6A 5'UTR       24284625//27773536
chr6:170101971-170101972(-) m6A 5'UTR       27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate WDR27
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B22-3p
Interactor2: WDR27

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

Starting a new search, please wait ...