Detail Information

Basic Information:


  VIRBase ID:  

VHID00584415

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B22-3p:           TPRA1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B22-3p TPRA1
miRBase
Accession/Entrez ID		 MIMAT0031773 131601
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - GPR175//TMEM227//TPRA40

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TPRA1
chr3:127300679(-) A-I      intronic
chr3:127300643(-) A-I      intronic
chr3:127300635(-) A-I      intronic
chr3:127302272(-) A-I      intronic
chr3:127302284(-) A-I      intronic
chr3:127302315(-) A-I      intronic
chr3:127302258(-) A-I      intronic
chr3:127302297(-) A-I      intronic
chr3:127302259(-) A-I      intronic
chr3:127302056(-) A-I      intronic
chr3:127302104(-) A-I      intronic
chr3:127302246(-) A-I      intronic
chr3:127302544(-) A-I      intronic
chr3:127307388(-) A-I      intronic
chr3:127307408(-) A-I      intronic
chr3:127307431(-) A-I      intronic
chr3:127300678(-) A-I      intronic
chr3:127300511(-) A-I      intronic
chr3:127301397(-) A-I      intronic
chr3:127301458(-) A-I      intronic
chr3:127301462(-) A-I      intronic
chr3:127301493(-) A-I      intronic
chr3:127307316(-) A-I      intronic
chr3:127307491(-) A-I      intronic
chr3:127307396(-) A-I      intronic
chr3:127307332(-) A-I      intronic
chr3:127302545(-) A-I      intronic
chr3:127300535(-) A-I      intronic
chr3:127307331(-) A-I      intronic
chr3:127301299(-) A-I      intronic
chr3:127307298(-) A-I      intronic
chr3:127303168(-) A-I      intronic
chr3:127302599(-) A-I      intronic
chr3:127307297(-) A-I      intronic
chr3:127307482(-) A-I      intronic
chr3:127307501(-) A-I      intronic
chr3:127300493(-) A-I      intronic
chr3:127307324(-) A-I      intronic
chr3:127307536(-) A-I      intronic
chr3:127303167(-) A-I      intronic
chr3:127307553(-) A-I      intronic
chr3:127307537(-) A-I      intronic
chr3:127307369(-) A-I      intronic
chr3:127307513(-) A-I      intronic
chr3:127307293(-) A-I      intronic
chr3:127307401(-) A-I      intronic
chr3:127305481(-) A-I      intronic
chr3:127300653(-) A-I      intronic
chr3:127307321(-) A-I      intronic
chr3:127305483(-) A-I      intronic
chr3:127307306(-) A-I      intronic
chr3:127302581(-) A-I      intronic
chr3:127302717(-) A-I      intronic
chr3:127305240(-) A-I      intronic
chr3:127307467(-) A-I      intronic
chr3:127303144(-) A-I      intronic
chr3:127302590(-) A-I      intronic
chr3:127305452(-) A-I      intronic
chr3:127302688(-) A-I      intronic
chr3:127303240(-) A-I      intronic
chr3:127302219(-) A-I      intronic
chr3:127301962(-) A-I      intronic
chr3:127305248(-) A-I      intronic
chr3:127303111(-) A-I      intronic
chr3:127305330(-) A-I      intronic
chr3:127302662(-) A-I      intronic
chr3:127300683(-) A-I      intronic
chr3:127303266(-) A-I      intronic
chr3:127303114(-) A-I      intronic
chr3:127301889(-) A-I      intronic
chr3:127307559(-) A-I      intronic
chr3:127303172(-) A-I      intronic
chr3:127305315(-) A-I      intronic
chr3:127302625(-) A-I      intronic
chr3:127302646(-) A-I      intronic
chr3:127302785(-) A-I      intronic
chr3:127301352(-) A-I      intronic
chr3:127300576(-) A-I      intronic
chr3:127301378(-) A-I      intronic
chr3:127300539(-) A-I      intronic
chr3:127300505(-) A-I      intronic
chr3:127302791(-) A-I      intronic
chr3:127302589(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TPRA1
chr3:127307293(-) A-I intron -    22028664
chr3:127307297(-) A-I intron -    22028664
chr3:127307298(-) A-I intron -    22028664
chr3:127307306(-) A-I intron -    22028664
chr3:127307316(-) A-I intron -    22028664
chr3:127307321(-) A-I intron -    22028664
chr3:127307324(-) A-I intron -    22028664
chr3:127307331(-) A-I intron -    22028664
chr3:127307332(-) A-I intron -    22028664
chr3:127307369(-) A-I intron -    22028664
chr3:127307396(-) A-I intron -    22028664
chr3:127307401(-) A-I intron -    22028664
chr3:127307467(-) A-I intron -    22028664
chr3:127307482(-) A-I intron -    22028664
chr3:127307491(-) A-I intron -    22028664
chr3:127307501(-) A-I intron -    22028664
chr3:127307513(-) A-I intron -    22028664
chr3:127307536(-) A-I intron -    22028664
chr3:127307537(-) A-I intron -    22028664
chr3:127307553(-) A-I intron -    22028664
chr3:127307559(-) A-I intron -    22028664
chr3:127300493(-) A-G intron -    22484847
chr3:127300505(-) A-G intron -    22484847
chr3:127300653(-) A-G intron -    22484847
chr3:127300683(-) A-G intron -    22484847
chr3:127301174(-) A-G intron -    22484847
chr3:127301299(-) A-G intron -    22484847
chr3:127301352(-) A-G intron -    22484847
chr3:127301373(-) T-C intron -    22484847
chr3:127302219(-) A-G intron -    22484847
chr3:127302327(-) A-G intron -    22484847
chr3:127302599(-) A-G intron -    22484847
chr3:127302625(-) A-G intron -    22484847
chr3:127302642(-) A-G intron -    22484847
chr3:127302646(-) A-G intron -    22484847
chr3:127302652(-) A-G intron -    22484847
chr3:127302662(-) A-G intron -    22484847
chr3:127302688(-) A-G intron -    22484847
chr3:127302717(-) A-G intron -    22484847
chr3:127302779(-) A-G intron -    22484847
chr3:127302785(-) A-G intron -    22484847
chr3:127302791(-) A-G intron -    22484847
chr3:127305248(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TPRA1
chr3:127292169-127292170(-) m6A 3'UTR       24284625//27371828//22575960
chr3:127292289-127292290(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr3:127292337-127292338(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr3:127292394-127292395(-) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960//22608085
chr3:127292472-127292473(-) Y 3'UTR//CDS       25219674//26075521
chr3:127298700-127298701(-) m6A CDS       24284625
chr3:127298879-127298880(-) m6A CDS       24284625
chr3:127298921-127298922(-) m6A CDS       24284625//27773536
chr3:127298984-127298985(-) m6A CDS       27773536
chr3:127299053-127299054(-) m6A 5'UTR//intron       27773536
chr3:127309479-127309480(-) m6A 5'UTR//intron       25456834//27371828
chr3:127309572-127309573(-) m6A 5'UTR//intron       25456834//24981863//27371828
chr3:127309581-127309582(-) m6A 5'UTR//intron       25456834//27371828
chr3:127309589-127309590(-) m6A 5'UTR//intron       25456834//27371828
chr3:127309597-127309598(-) m6A 5'UTR//intron       25456834//27371828
chr3:127314318-127314319(-) m6A 5'UTR//intron       25456834
chr3:127314381-127314382(-) m6A 5'UTR//intron       25456834

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TPRA1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B22-3p
Interactor2: TPRA1

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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