Detail Information

Basic Information:


  VIRBase ID:  

VHID00583405

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B22-3p:           LDAH:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B22-3p LDAH
miRBase
Accession/Entrez ID		 MIMAT0031773 60526
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - C2orf43//hLDAH

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LDAH
chr2:20984565(-) A-I      intronic
chr2:20898276(-) A-I      intronic
chr2:20955908(-) A-I      intronic
chr2:20984601(-) A-I      intronic
chr2:20984600(-) A-I      intronic
chr2:20984484(-) A-I      intronic
chr2:20984167(-) A-I      intronic
chr2:20984153(-) A-I      intronic
chr2:20983596(-) A-I      intronic
chr2:20983574(-) A-I      intronic
chr2:20956086(-) A-I      intronic
chr2:20955932(-) A-I      intronic
chr2:20929716(-) A-I      intronic
chr2:20898206(-) A-I      intronic
chr2:20955797(-) A-I      intronic
chr2:20891008(-) A-I      intronic
chr2:20984571(-) A-I      intronic
chr2:20983537(-) A-I      intronic
chr2:20891136(-) A-I      intronic
chr2:20891007(-) A-I      intronic
chr2:21001887(-) A-I      intronic
chr2:20983639(-) A-I      intronic
chr2:20929616(-) A-I      intronic
chr2:20891119(-) A-I      intronic
chr2:20929634(-) A-I      intronic
chr2:20898245(-) A-I      intronic
chr2:20891083(-) A-I      intronic
chr2:20983969(-) A-I      intronic
chr2:20891099(-) A-I      intronic
chr2:20898409(-) A-I      intronic
chr2:20898316(-) A-I      intronic
chr2:20898383(-) A-I      intronic
chr2:20933481(-) A-I      intronic
chr2:20956074(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LDAH
chr2:20883795-20883796(-) m6A 3'UTR       27773535
chr2:20883933-20883934(-) m6A 3'UTR       27773535
chr2:20884054-20884055(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr2:20884065-20884066(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr2:20884107-20884108(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr2:20884120-20884121(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr2:20884129-20884130(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr2:20884193-20884194(-) m6A 3'UTR//exon       24981863//27773535
chr2:20884215-20884216(-) m6A 3'UTR//exon       24981863//27773535
chr2:20884305-20884306(-) m6A 3'UTR//exon       24981863//27773535
chr2:20884349-20884350(-) m6A 3'UTR//exon       24981863//27773535
chr2:20884355-20884356(-) m6A 3'UTR//exon       27773535
chr2:20885382-20885383(-) m6A 3'UTR//CDS//exon       24284625//24981863
chr2:20885472-20885473(-) m6A 3'UTR//exon//intron       24284625//24981863
chr2:20885541-20885542(-) m6A 3'UTR//exon//intron       24981863
chr2:20886440-20886441(-) m6A 3'UTR//exon//intron       27773535
chr2:20886449-20886450(-) m6A 3'UTR//exon//intron       27773535
chr2:20886496-20886497(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22608085
chr2:20886533-20886534(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22608085
chr2:20886548-20886549(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22608085
chr2:20886576-20886577(-) m6A 3'UTR//exon//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr2:20886605-20886606(-) m6A 3'UTR//exon//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:20886648-20886649(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27773535//22575960//22608085
chr2:20886705-20886706(-) m6A 3'UTR//CDS//exon       24284625//24981863//27773535//22575960//22608085
chr2:20886750-20886751(-) m6A 3'UTR//CDS//exon       24284625//24981863
chr2:20886771-20886772(-) m6A 3'UTR//CDS//exon       24284625//24981863
chr2:21001156-21001157(-) m6A CDS//intron       24981863
chr2:21001211-21001212(-) m6A CDS//intron       24284625//24981863
chr2:21001218-21001219(-) m6A CDS//intron       24284625//24981863
chr2:21022799-21022800(-) m6A 5'UTR       24284625//24981863
chr2:21022832-21022833(-) m6A 5'UTR       24284625//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate LDAH
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B22-3p
Interactor2: LDAH

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

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