Detail Information

Basic Information:


  VIRBase ID:  

VHID00583075

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B22-3p:           RBM22:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B22-3p RBM22
miRBase
Accession/Entrez ID		 MIMAT0031773 55696
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - Cwc2//fSAP47//ZC3H16

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RBM22
chr5:150079117(-) A-I      intronic
chr5:150074622(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RBM22
chr5:150074685(-) G-A intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RBM22
chr5:150070515-150070516(-) m6A 3'UTR//exon       24981863//26404942//22575960//22608085
chr5:150070569-150070570(-) m6A 3'UTR//exon       24284625//24981863//26404942//22575960//22608085
chr5:150070585-150070586(-) m6A 3'UTR//exon       24284625//24981863//26404942//22575960//22608085
chr5:150070597-150070598(-) m6A 3'UTR//exon       24284625//24981863//26404942//22575960//22608085
chr5:150070629-150070630(-) m6A 3'UTR//exon       24284625//24981863//26404942//22608085
chr5:150070664-150070665(-) m6A 3'UTR//exon       24284625//24981863//26404942//22608085
chr5:150070707-150070708(-) m6A 3'UTR//exon       24284625//24981863//26404942//27773535//22608085
chr5:150070806-150070807(-) m6A 3'UTR//exon       24981863//27773535
chr5:150070940-150070941(-) m6A 3'UTR//exon       27773535
chr5:150071045-150071046(-) m6A 3'UTR//exon       24284625//24209618//24981863//26404942//27773535//27371828//22575960//22608085
chr5:150071078-150071079(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr5:150071134-150071135(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr5:150071177-150071178(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//22575960//22608085
chr5:150071265-150071266(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr5:150071327-150071328(-) m6A CDS//exon       24284625//24209618//27773535
chr5:150071358-150071359(-) m6A CDS//exon       24284625//24209618//27773535
chr5:150071381-150071382(-) m6A CDS//exon       24284625//24209618//27773535
chr5:150071411-150071412(-) m6A CDS//exon       24284625//24209618//27773535
chr5:150072503-150072504(-) m6A CDS//exon       24284625//27773535//27371828//27773536
chr5:150072802-150072803(-) m6A CDS//exon       24284625//27773535//27371828//27773536
chr5:150072808-150072809(-) m6A CDS//exon       24284625//27773535//27371828//27773536
chr5:150072821-150072822(-) m6A CDS//exon       27773535
chr5:150072828-150072829(-) m6A CDS//exon       27773535
chr5:150073657-150073658(-) m6A CDS//exon       27773535
chr5:150080426-150080427(-) m6A CDS//intron       27371828//27773536
chr5:150080506-150080507(-) m6A CDS//exon       24981863//27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RBM22
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B22-3p
Interactor2: RBM22

Evidence Support:


Prediction-Evidence miRanda//PITA
Support Database VmiReg

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