Detail Information

Basic Information:


  VIRBase ID:  

VHID00582361

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B22-3p:           CDC42EP4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B22-3p CDC42EP4
miRBase
Accession/Entrez ID		 MIMAT0031773 23580
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - BORG4//CEP4//KAIA1777

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CDC42EP4
chr17:71304123(-) A-I      intronic
chr17:71298262(-) A-I      intronic
chr17:71298252(-) A-I      intronic
chr17:71298245(-) A-I      intronic
chr17:71298224(-) A-I      intronic
chr17:71297099(-) A-I      intronic
chr17:71297084(-) A-I      intronic
chr17:71297075(-) A-I      intronic
chr17:71297072(-) A-I      intronic
chr17:71297076(-) A-I      intronic
chr17:71298254(-) A-I      intronic
chr17:71297062(-) A-I      intronic
chr17:71300538(-) A-I      intronic
chr17:71299618(-) A-I      intronic
chr17:71298752(-) A-I      intronic
chr17:71298731(-) A-I      intronic
chr17:71298055(-) A-I      intronic
chr17:71297931(-) A-I      intronic
chr17:71297908(-) A-I      intronic
chr17:71295373(-) A-I      intronic
chr17:71293962(-) A-I      intronic
chr17:71304132(-) A-I      intronic
chr17:71304118(-) A-I      intronic
chr17:71304045(-) A-I      intronic
chr17:71304037(-) A-I      intronic
chr17:71304021(-) A-I      intronic
chr17:71304019(-) A-I      intronic
chr17:71304001(-) A-I      intronic
chr17:71303996(-) A-I      intronic
chr17:71303989(-) A-I      intronic
chr17:71303972(-) A-I      intronic
chr17:71293530(-) A-I      intronic
chr17:71303924(-) A-I      intronic
chr17:71293491(-) A-I      intronic
chr17:71299744(-) A-I      intronic
chr17:71299629(-) A-I      intronic
chr17:71293942(-) A-I      intronic
chr17:71302539(-) A-I      intronic
chr17:71297138(-) A-I      intronic
chr17:71304948(-) A-I      intronic
chr17:71297778(-) A-I      intronic
chr17:71292803(-) A-I      intronic
chr17:71305053(-) A-I      intronic
chr17:71298758(-) A-I      intronic
chr17:71294077(-) A-I      intronic
chr17:71291003(-) A-I      intronic
chr17:71305055(-) A-I      intronic
chr17:71303751(-) A-I      intronic
chr17:71293951(-) A-I      intronic
chr17:71298140(-) A-I      intronic
chr17:71299583(-) A-I      intronic
chr17:71293852(-) A-I      intronic
chr17:71291874(-) A-I      intronic
chr17:71298167(-) A-I      intronic
chr17:71302524(-) A-I      intronic
chr17:71295715(-) A-I      intronic
chr17:71300499(-) A-I      intronic
chr17:71292865(-) A-I      intronic
chr17:71302370(-) A-I      intronic
chr17:71305005(-) A-I      intronic
chr17:71293828(-) A-I      intronic
chr17:71291961(-) A-I      intronic
chr17:71299738(-) A-I      intronic
chr17:71297783(-) A-I      intronic
chr17:71290408(-) A-I      intronic
chr17:71304094(-) A-I      intronic
chr17:71290368(-) A-I      intronic
chr17:71298777(-) A-I      intronic
chr17:71293935(-) A-I      intronic
chr17:71295693(-) A-I      intronic
chr17:71291009(-) A-I      intronic
chr17:71304148(-) A-I      intronic
chr17:71298691(-) A-I      intronic
chr17:71297943(-) A-I      intronic
chr17:71293992(-) A-I      intronic
chr17:71291017(-) A-I      intronic
chr17:71299443(-) A-I      intronic
chr17:71293599(-) A-I      intronic
chr17:71298166(-) A-I      intronic
chr17:71291935(-) A-I      intronic
chr17:71294071(-) A-I      intronic
chr17:71291064(-) A-I      intronic
chr17:71291944(-) A-I      intronic
chr17:71298694(-) A-I      intronic
chr17:71302366(-) A-I      intronic
chr17:71303824(-) A-I      intronic
chr17:71297824(-) A-I      intronic
chr17:71300532(-) A-I      intronic
chr17:71294847(-) A-I      intronic
chr17:71298724(-) A-I      intronic
chr17:71304153(-) A-I      intronic
chr17:71300541(-) A-I      intronic
chr17:71299419(-) A-I      intronic
chr17:71298259(-) A-I      intronic
chr17:71302517(-) A-I      intronic
chr17:71294682(-) A-I      intronic
chr17:71295253(-) A-I      intronic
chr17:71294821(-) A-I      intronic
chr17:71299682(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CDC42EP4
chr17:71297138(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CDC42EP4
chr17:71279786-71279787(-) m6A 3'UTR       24284625
chr17:71279797-71279798(-) m6A 3'UTR       24284625
chr17:71279824-71279825(-) m6A 3'UTR       24284625//27773535
chr17:71279891-71279892(-) m6A 3'UTR       24284625//27773535
chr17:71279968-71279969(-) m6A 3'UTR       24284625
chr17:71280054-71280055(-) m6A 3'UTR       24284625
chr17:71280061-71280062(-) m6A 3'UTR       24284625
chr17:71280112-71280113(-) m6A 3'UTR       24284625
chr17:71280643-71280644(-) m6A 3'UTR       24209618//24981863//26404942//22608085
chr17:71280658-71280659(-) m6A 3'UTR       24209618//24981863//26404942//22608085
chr17:71280672-71280673(-) m6A 3'UTR       24209618//24981863//26404942//22608085
chr17:71280697-71280698(-) m6A 3'UTR       24209618//24981863//22608085
chr17:71280745-71280746(-) m6A 3'UTR       24209618//24981863
chr17:71280876-71280877(-) m6A 3'UTR       24284625//24209618//24981863//26404942
chr17:71280899-71280900(-) m6A 3'UTR       24284625//24209618//24981863//26404942
chr17:71280953-71280954(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535
chr17:71281170-71281171(-) m6A 3'UTR       24284625//24209618//24981863//22575960
chr17:71281325-71281326(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr17:71281427-71281428(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr17:71281437-71281438(-) Tm 3'UTR       -
chr17:71281443-71281444(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr17:71281450-71281451(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr17:71281457-71281458(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr17:71281470-71281471(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//27773536//22575960//22608085
chr17:71281562-71281563(-) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr17:71281620-71281621(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr17:71281628-71281629(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr17:71281653-71281654(-) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr17:71281722-71281723(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr17:71281824-71281825(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr17:71281947-71281948(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27371828//27773536//22575960//22608085
chr17:71281962-71281963(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27371828//27773536//22575960//22608085
chr17:71282203-71282204(-) m1A CDS//intron       26863410
chr17:71282316-71282317(-) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//27773536//22575960//22608085
chr17:71282438-71282439(-) m6A CDS//intron       24284625//25456834//24981863//27773536//22575960//22608085
chr17:71282493-71282494(-) m6A CDS//intron       24284625//25456834//24981863//27773536//22575960//22608085
chr17:71282577-71282578(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr17:71282686-71282687(-) m6A 5'UTR//exon       24284625//24981863//27773535//27371828//27773536//22575960//22608085
chr17:71282705-71282706(-) m6A 5'UTR//exon       24284625//24981863//27773535//27371828//27773536//22575960
chr17:71282711-71282712(-) m6A 5'UTR//exon       24284625//24981863//27773535//27371828//27773536//22575960
chr17:71282904-71282905(-) m6A 5'UTR//intron       24284625//24981863//27371828
chr17:71282960-71282961(-) m6A 5'UTR//intron       24284625//24981863
chr17:71307081-71307082(-) m6A 5'UTR//intron       24981863
chr17:71308036-71308037(-) m6A 5'UTR//exon       24209618//25456834//24981863
chr17:71308071-71308072(-) m6A 5'UTR//exon       24209618//25456834//24981863
chr17:71308131-71308132(-) m6A 5'UTR//exon       24209618//25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CDC42EP4
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B22-3p
Interactor2: CDC42EP4

Evidence Support:


Prediction-Evidence miRanda//RNAHybrid//Targetscan
Support Database VmiReg

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