Basic Information:

  VIRBase ID:  

VHID00580440

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B22-3p:  MIMAT0031773          LMO2:  NM_001142316     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hbv-miR-B22-3p	LMO2
miRBase Accession/Entrez ID	MIMAT0031773	4005
Organism	Macacine alphaherpesvirus 1 (CeHV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	LMO-2//RBTN2//RBTNL1//RHOM2//TTG2

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LMO2	chr11:33897048(-) A-I      intronic chr11:33899073(-) A-I      intronic chr11:33897080(-) A-I      intronic chr11:33899261(-) A-I      intronic chr11:33899253(-) A-I      intronic chr11:33899078(-) A-I      intronic chr11:33897042(-) A-I      intronic chr11:33899149(-) A-I      intronic chr11:33894555(-) A-I      intronic chr11:33894472(-) A-I      intronic chr11:33894367(-) A-I      intronic chr11:33893028(-) A-I      intronic chr11:33893027(-) A-I      intronic chr11:33888043(-) A-I      intronic chr11:33897038(-) A-I      intronic chr11:33888294(-) A-I      intronic chr11:33899113(-) A-I      intronic chr11:33888330(-) A-I      intronic chr11:33892998(-) A-I      intronic chr11:33893057(-) A-I      intronic chr11:33893067(-) A-I      intronic chr11:33899122(-) A-I      intronic chr11:33894345(-) A-I      intronic chr11:33894446(-) A-I      intronic chr11:33899135(-) A-I      intronic chr11:33888375(-) A-I      intronic chr11:33894503(-) A-I      intronic chr11:33892937(-) A-I      intronic chr11:33888313(-) A-I      intronic chr11:33899143(-) A-I      intronic chr11:33900931(-) A-I      intronic chr11:33888168(-) A-I      intronic chr11:33888329(-) A-I      intronic chr11:33888164(-) A-I      intronic chr11:33894512(-) A-I      intronic chr11:33899290(-) A-I      intronic chr11:33896976(-) A-I      intronic chr11:33894379(-) A-I      intronic chr11:33893052(-) A-I      intronic chr11:33896958(-) A-I      intronic chr11:33894383(-) A-I      intronic chr11:33911924(-) A-I      intronic chr11:33888306(-) A-I      intronic chr11:33888288(-) A-I      intronic chr11:33888632(-) A-I      intronic chr11:33888356(-) A-I      intronic chr11:33893619(-) A-I      intronic chr11:33888087(-) A-I      intronic chr11:33888082(-) A-I      intronic chr11:33888060(-) A-I      intronic chr11:33888139(-) A-I      intronic chr11:33893553(-) A-I      intronic chr11:33888100(-) A-I      intronic chr11:33888365(-) A-I      intronic chr11:33894445(-) A-I      intronic chr11:33899193(-) A-I      intronic chr11:33899284(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LMO2	chr11:33880528-33880529(-) m6A 3'UTR//exon       - chr11:33880554-33880555(-) m6A 3'UTR//exon       - chr11:33880629-33880630(-) m6A 3'UTR//exon       - chr11:33880682-33880683(-) m6A 3'UTR//exon       - chr11:33880700-33880701(-) m6A 3'UTR//exon       - chr11:33880754-33880755(-) m6A 3'UTR//exon       - chr11:33880773-33880774(-) m6A 3'UTR//exon       - chr11:33880924-33880925(-) m6A 3'UTR//CDS//exon       25456834 chr11:33880938-33880939(-) m6A 3'UTR//CDS//exon       25456834 chr11:33880943-33880944(-) m6A 3'UTR//CDS//exon       25456834 chr11:33881043-33881044(-) m6A 3'UTR//CDS//exon       - chr11:33891485-33891486(-) m6A 5'UTR//exon       - chr11:33891510-33891511(-) m6A 5'UTR//exon       - chr11:33891517-33891518(-) m6A 5'UTR//exon       - chr11:33913434-33913435(-) m6A 5'UTR       - chr11:33913593-33913594(-) m6A 5'UTR       - chr11:33913620-33913621(-) m6A 5'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LMO2	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hbv-miR-B22-3p
Interactor2: LMO2

Evidence Support:

Prediction-Evidence	miRanda//Targetscan
Support Database	VmiReg