Basic Information:

  VIRBase ID:  

VHID00579501

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B14RC-3p:  MIMAT0031772          CCDC180:  NM_001348010     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hbv-miR-B14RC-3p	CCDC180
miRBase Accession/Entrez ID	MIMAT0031772	100499483
Organism	Macacine alphaherpesvirus 1 (CeHV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	C9orf174//CFAP76//FAP76

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CCDC180	chr9:100107972(+) A-I      Syn:Leu->Leu chr9:100136897(+) A-I      NonSyn:Glu->Gly

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CCDC180	chr9:100075560-100075561(+) m6A CDS//exon       - chr9:100092616-100092617(+) m6A CDS//exon       - chr9:100092640-100092641(+) m6A CDS//exon       24981863//22608085 chr9:100092669-100092670(+) m6A CDS//exon       24981863//22608085 chr9:100092704-100092705(+) m6A CDS//exon       24981863//22608085 chr9:100092850-100092851(+) m6A CDS//exon       24284625//25456834//24981863//27773535//22608085 chr9:100092888-100092889(+) m6A CDS//exon       25456834//27773535//22608085 chr9:100105625-100105626(+) m1A CDS//exon//intron       26863196 chr9:100105628-100105629(+) m6A CDS//exon//intron       25456834//24981863//27773535 chr9:100105664-100105665(+) m6A CDS//exon//intron       25456834//24981863 chr9:100111422-100111423(+) m6A CDS//exon//intron       - chr9:100111512-100111513(+) m6A CDS//exon//intron       - chr9:100136590-100136591(+) m6A exon//intron       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	CCDC180	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)     - Exosome Blood     - Membrane HCC cell line (HepG2)     - Nucleus K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hbv-miR-B14RC-3p
Interactor2: CCDC180

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg