Basic Information:

  VIRBase ID:  

VHID00579222

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B14RC-3p:  MIMAT0031772          LYSMD1:  NM_212551     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hbv-miR-B14RC-3p	LYSMD1
miRBase Accession/Entrez ID	MIMAT0031772	388695
Organism	Macacine alphaherpesvirus 1 (CeHV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	SB145

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LYSMD1	chr1:151136485(-) A-I      intronic chr1:151134902(-) A-I      intronic chr1:151136459(-) A-I      intronic chr1:151136081(-) A-I      intronic chr1:151134899(-) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LYSMD1	chr1:151132670-151132671(-) Y 3'UTR       26075521 chr1:151133160-151133161(-) m6A 3'UTR       25456834//27371828//22608085 chr1:151133165-151133166(-) m6A 3'UTR       25456834//27371828//22608085 chr1:151133276-151133277(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr1:151133313-151133314(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//22575960//22608085 chr1:151133346-151133347(-) m6A 3'UTR       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr1:151133363-151133364(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr1:151133385-151133386(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr1:151133395-151133396(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr1:151133401-151133402(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//27773536//22575960//22608085 chr1:151134323-151134324(-) m6A CDS       27773535//27371828 chr1:151134374-151134375(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr1:151134381-151134382(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr1:151134463-151134464(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr1:151134481-151134482(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr1:151134515-151134516(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr1:151134553-151134554(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr1:151134570-151134571(-) m6A CDS       24284625//24981863//27773535//27371828//22608085 chr1:151137578-151137579(-) m6A CDS//intron       24284625//24981863//27773535//27371828//22608085 chr1:151137591-151137592(-) m6A CDS//intron       24284625//24981863//27773535//27371828//22608085 chr1:151137692-151137693(-) m6A CDS//intron       24284625//24981863//27371828//22608085 chr1:151137716-151137717(-) m6A CDS//intron       24284625//24981863//27371828//22608085 chr1:151137807-151137808(-) m6A 5'UTR//intron       24981863//27773535//22608085 chr1:151137858-151137859(-) m6A 5'UTR//intron       24981863//27773535//27371828//22608085 chr1:151137898-151137899(-) m6A 5'UTR//intron       24981863//27773535//27371828//22608085 chr1:151137934-151137935(-) m6A 5'UTR//intron       24284625//25456834//24981863//27773535//27371828//22608085 chr1:151137950-151137951(-) m6A 5'UTR//intron       24284625//25456834//24981863//27773535//27371828//22608085 chr1:151138066-151138067(-) m6A 5'UTR//intron       24284625//25456834//24981863//27773535//27371828//22608085 chr1:151138120-151138121(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr1:151138132-151138133(-) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr1:151138246-151138247(-) m6A 5'UTR//CDS       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085 chr1:151138304-151138305(-) m6A 5'UTR       24284625//25456834//24981863//27773535//27371828//22608085 chr1:151138365-151138366(-) m6A 5'UTR       24284625//25456834//24981863//27773535//27371828//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LYSMD1	Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hbv-miR-B14RC-3p
Interactor2: LYSMD1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg