Detail Information

Basic Information:


  VIRBase ID:  

VHID00578478

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B14RC-3p:           TMEM167A:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B14RC-3p TMEM167A
miRBase
Accession/Entrez ID		 MIMAT0031772 153339
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - TMEM167

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TMEM167A
chr5:82370728(-) A-I      intronic
chr5:82370767(-) A-I      intronic
chr5:82357352(-) A-I      intronic
chr5:82357366(-) A-I      intronic
chr5:82368486(-) A-I      intronic
chr5:82371512(-) A-I      intronic
chr5:82368423(-) A-I      intronic
chr5:82368539(-) A-I      intronic
chr5:82370727(-) A-I      intronic
chr5:82371371(-) A-I      intronic
chr5:82371481(-) A-I      intronic
chr5:82371398(-) A-I      intronic
chr5:82371391(-) A-I      intronic
chr5:82357418(-) A-I      intronic
chr5:82370796(-) A-I      intronic
chr5:82368530(-) A-I      intronic
chr5:82357487(-) A-I      intronic
chr5:82357415(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TMEM167A
chr5:82357418(-) A-G intron -    22484847
chr5:82370861(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TMEM167A
chr5:82349080-82349081(-) m6A 3'UTR       24284625//25456834//22608085
chr5:82349209-82349210(-) m6A 3'UTR       22608085
chr5:82352749-82352750(-) m6A 3'UTR//exon       24981863//22608085
chr5:82352801-82352802(-) m6A 3'UTR//exon       24284625//24981863//22575960//22608085
chr5:82352850-82352851(-) m6A 3'UTR//exon       24284625//24981863//22575960//22608085
chr5:82352856-82352857(-) m6A 3'UTR//exon       24284625//24981863//22575960//22608085
chr5:82360830-82360831(-) m6A CDS//exon//intron       24284625
chr5:82360841-82360842(-) m6A CDS//exon//intron       24284625
chr5:82367200-82367201(-) m6A exon//intron       24284625//24981863
chr5:82373205-82373206(-) m6A 5'UTR//exon//intron       25456834//24981863
chr5:82373649-82373650(-) m6A exon       25456834
chr5:82373665-82373666(-) m6A exon       25456834

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TMEM167A
Chromatin K562 cells     -
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B14RC-3p
Interactor2: TMEM167A

Evidence Support:


Prediction-Evidence miRanda//PITA//Targetscan
Support Database VmiReg

Starting a new search, please wait ...