Basic Information:

  VIRBase ID:  

VHID00572970

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B14RC-3p:  MIMAT0031772          PDGFRB:  NR_149150     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hbv-miR-B14RC-3p	PDGFRB
miRBase Accession/Entrez ID	MIMAT0031772	5159
Organism	Macacine alphaherpesvirus 1 (CeHV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CD140B//IBGC4//IMF1//JTK12//KOGS//PDGFR//PDGFR-1//PDGFR1//PENTT

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	PDGFRB	chr5:149531673(-) A-I      intronic chr5:149531664(-) A-I      intronic chr5:149531663(-) A-I      intronic chr5:149525352(-) A-I      intronic chr5:149525377(-) A-I      intronic chr5:149531547(-) A-I      intronic chr5:149531649(-) A-I      intronic chr5:149531266(-) A-I      intronic chr5:149531268(-) A-I      intronic chr5:149531563(-) A-I      intronic chr5:149526260(-) A-I      intronic chr5:149525378(-) A-I      intronic chr5:149526224(-) A-I      intronic chr5:149531595(-) A-I      intronic chr5:149531599(-) A-I      intronic chr5:149525460(-) A-I      intronic chr5:149525381(-) A-I      intronic chr5:149525427(-) A-I      intronic chr5:149531567(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	PDGFRB	chr5:149531599(-) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	PDGFRB	chr5:149493522-149493523(-) m6A 3'UTR//exon       24284625 chr5:149493780-149493781(-) m6A 3'UTR//intron       24284625 chr5:149493910-149493911(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863 chr5:149493930-149493931(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863 chr5:149493939-149493940(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863 chr5:149493948-149493949(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863 chr5:149494019-149494020(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863 chr5:149494069-149494070(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863 chr5:149494077-149494078(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863 chr5:149494087-149494088(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863 chr5:149494158-149494159(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535 chr5:149494196-149494197(-) m6A 3'UTR//intron       24284625//24209618//25456834//27773535 chr5:149494204-149494205(-) m6A 3'UTR//intron       24284625//24209618//25456834//27773535 chr5:149494267-149494268(-) m6A 3'UTR//intron       24284625//24209618//25456834//27773535 chr5:149494362-149494363(-) m6A 3'UTR//exon       24284625//24209618//24981863 chr5:149494438-149494439(-) m6A 3'UTR//exon       24284625//24209618//24981863 chr5:149494679-149494680(-) m6A 3'UTR       24284625 chr5:149495070-149495071(-) m6A 3'UTR       24284625//24981863 chr5:149495142-149495143(-) m6A 3'UTR       24284625//24981863 chr5:149495171-149495172(-) m6A 3'UTR       24284625 chr5:149495385-149495386(-) m6A 3'UTR//CDS       24284625 chr5:149495439-149495440(-) m6A 3'UTR//CDS       24284625 chr5:149497230-149497231(-) m6A 3'UTR//CDS       24284625 chr5:149514356-149514357(-) m6A CDS       24981863 chr5:149514369-149514370(-) m6A CDS       24981863 chr5:149514389-149514390(-) m6A CDS       24981863 chr5:149535025-149535026(-) m6A 5'UTR//exon       - chr5:149535067-149535068(-) m6A 5'UTR//exon       - chr5:149535247-149535248(-) m6A 5'UTR//exon       - chr5:149535255-149535256(-) m6A 5'UTR//exon       - chr5:149535374-149535375(-) m6A 5'UTR//exon       25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	PDGFRB	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hbv-miR-B14RC-3p
Interactor2: PDGFRB

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid
Support Database	VmiReg