Detail Information

Basic Information:


  VIRBase ID:  

VHID00572948

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B14RC-3p:           PCDH1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B14RC-3p PCDH1
miRBase
Accession/Entrez ID		 MIMAT0031772 5097
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - PC42//PCDH42

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PCDH1
chr5:141232956-141232957(-) m6A 3'UTR       25456834//24981863
chr5:141233042-141233043(-) m6A 3'UTR       25456834//24981863
chr5:141233147-141233148(-) m6A 3'UTR       25456834
chr5:141233184-141233185(-) m6A 3'UTR       25456834
chr5:141233511-141233512(-) m6A 3'UTR       25456834
chr5:141233667-141233668(-) m6A 3'UTR//CDS       25456834//24981863
chr5:141233674-141233675(-) m6A 3'UTR//CDS       25456834//24981863
chr5:141233709-141233710(-) m6A 3'UTR//CDS       25456834//24981863
chr5:141233784-141233785(-) m6A 3'UTR//CDS       25456834//24981863
chr5:141233790-141233791(-) m6A 3'UTR//CDS       25456834//24981863
chr5:141233841-141233842(-) m6A 3'UTR//CDS       25456834//24981863
chr5:141233867-141233868(-) m6A 3'UTR//CDS       25456834//24981863
chr5:141233887-141233888(-) m6A 3'UTR//CDS       25456834//24981863
chr5:141236980-141236981(-) m6A CDS       -
chr5:141242729-141242730(-) m6A 3'UTR//CDS//exon//intron       24981863
chr5:141242872-141242873(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27773535//22608085
chr5:141242893-141242894(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27773535//22608085
chr5:141242908-141242909(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27773535//22608085
chr5:141243052-141243053(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27773535//22608085
chr5:141243169-141243170(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27773535//27773536//22608085
chr5:141243211-141243212(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27773536//22608085
chr5:141243218-141243219(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27773536//22608085
chr5:141243261-141243262(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27773536
chr5:141243403-141243404(-) m6A 3'UTR//CDS//exon//intron       25456834//24981863
chr5:141243425-141243426(-) m6A 3'UTR//CDS//exon//intron       25456834//24981863
chr5:141243452-141243453(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863
chr5:141243606-141243607(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//22608085
chr5:141243667-141243668(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//22608085
chr5:141243707-141243708(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//22608085
chr5:141243934-141243935(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//22608085
chr5:141243976-141243977(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27773535//22575960//22608085
chr5:141244024-141244025(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27773535//22575960//22608085
chr5:141244084-141244085(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//27773535//22608085
chr5:141244176-141244177(-) m6A 3'UTR//CDS//exon//intron       25456834//24981863//22608085
chr5:141244193-141244194(-) m6A 3'UTR//CDS//exon//intron       25456834//24981863//22608085
chr5:141244214-141244215(-) m6A 3'UTR//CDS//exon//intron       25456834//24981863//22608085
chr5:141244342-141244343(-) m6A 3'UTR//CDS//exon//intron       25456834
chr5:141244456-141244457(-) m6A 3'UTR//CDS//exon//intron       24284625//24981863
chr5:141244483-141244484(-) m6A 3'UTR//CDS//exon//intron       24981863
chr5:141244501-141244502(-) m6A 3'UTR//CDS//exon//intron       24981863
chr5:141244517-141244518(-) m6A 3'UTR//CDS//exon//intron       24981863
chr5:141244553-141244554(-) m6A 3'UTR//CDS//exon//intron       24981863
chr5:141244661-141244662(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//22608085
chr5:141244759-141244760(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//22608085
chr5:141244813-141244814(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//22608085
chr5:141244849-141244850(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//22608085
chr5:141244858-141244859(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//22608085
chr5:141244884-141244885(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//22608085
chr5:141244891-141244892(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//22608085
chr5:141244897-141244898(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//22608085
chr5:141244972-141244973(-) m6A 3'UTR//CDS//exon//intron       24284625//25456834//24981863//22608085
chr5:141248172-141248173(-) m6A CDS//exon       24284625//25456834//24981863
chr5:141248305-141248306(-) m6A CDS//exon       24284625//25456834//24981863//27773536//22608085
chr5:141248320-141248321(-) m6A CDS//exon       24284625//25456834//24981863//27773536//22608085
chr5:141248365-141248366(-) m6A CDS//exon       24284625//25456834//24981863//22608085
chr5:141248455-141248456(-) m6A CDS//exon       24284625//25456834//24981863//27773535//22608085
chr5:141248497-141248498(-) m6A CDS//exon       24284625//25456834//24981863//27773535
chr5:141248557-141248558(-) m6A CDS//exon       24284625//24981863//27773535
chr5:141248611-141248612(-) m6A CDS//exon       24284625//24981863//27773535
chr5:141248662-141248663(-) m6A CDS//exon       27773535
chr5:141248699-141248700(-) m6A CDS//exon       24981863
chr5:141248723-141248724(-) m6A CDS//exon       24981863
chr5:141257822-141257823(-) m6A CDS//intron       27773536
chr5:141257886-141257887(-) m6A 5'UTR//intron       27773536
chr5:141258753-141258754(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate PCDH1
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B14RC-3p
Interactor2: PCDH1

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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