Detail Information

Basic Information:


  VIRBase ID:  

VHID00570653

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B26-5p:           SYDE2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B26-5p SYDE2
miRBase
Accession/Entrez ID		 MIMAT0031771 84144
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SYDE2
chr1:85628946(-) A-I      intronic
chr1:85627323(-) A-I      intronic
chr1:85646264(-) A-I      intronic
chr1:85629009(-) A-I      intronic
chr1:85629004(-) A-I      intronic
chr1:85628994(-) A-I      intronic
chr1:85628992(-) A-I      intronic
chr1:85640938(-) A-I      intronic
chr1:85627326(-) A-I      intronic
chr1:85627314(-) A-I      intronic
chr1:85628964(-) A-I      intronic
chr1:85628966(-) A-I      intronic
chr1:85640939(-) A-I      intronic
chr1:85627243(-) A-I      intronic
chr1:85628984(-) A-I      intronic
chr1:85627327(-) A-I      intronic
chr1:85628985(-) A-I      intronic
chr1:85627224(-) A-I      intronic
chr1:85646252(-) A-I      intronic
chr1:85628961(-) A-I      intronic
chr1:85628954(-) A-I      intronic
chr1:85628986(-) A-I      intronic
chr1:85641053(-) A-I      intronic
chr1:85641071(-) A-I      intronic
chr1:85641083(-) A-I      intronic
chr1:85646828(-) A-I      intronic
chr1:85646205(-) A-I      intronic
chr1:85631984(-) A-I      intronic
chr1:85640926(-) A-I      intronic
chr1:85640991(-) A-I      intronic
chr1:85641011(-) A-I      intronic
chr1:85641017(-) A-I      intronic
chr1:85641035(-) A-I      intronic
chr1:85641039(-) A-I      intronic
chr1:85631975(-) A-I      intronic
chr1:85631976(-) A-I      intronic
chr1:85646334(-) A-I      intronic
chr1:85646207(-) A-I      intronic
chr1:85646246(-) A-I      intronic
chr1:85646210(-) A-I      intronic
chr1:85646254(-) A-I      intronic
chr1:85646316(-) A-I      intronic
chr1:85659605(-) A-I      intronic
chr1:85632000(-) A-I      intronic
chr1:85628990(-) A-I      intronic
chr1:85641140(-) A-I      intronic
chr1:85646311(-) A-I      intronic
chr1:85641096(-) A-I      intronic
chr1:85659409(-) A-I      intronic
chr1:85633710(-) A-I      intronic
chr1:85641153(-) A-I      intronic
chr1:85640948(-) A-I      intronic
chr1:85641020(-) A-I      intronic
chr1:85646228(-) A-I      intronic
chr1:85646176(-) A-I      intronic
chr1:85646185(-) A-I      intronic
chr1:85641074(-) A-I      intronic
chr1:85627362(-) A-I      intronic
chr1:85641146(-) A-I      intronic
chr1:85646841(-) A-I      intronic
chr1:85641014(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SYDE2
chr1:85646841(-) A-I intron -    15342557
chr1:85646940(-) A-I intron -    15342557
chr1:85646959(-) A-I intron -    15342557
chr1:85646972(-) A-I intron -    15342557
chr1:85647033(-) A-I intron -    15342557
chr1:85647047(-) A-I intron -    15342557
chr1:85647053(-) A-I intron -    15342557
chr1:85647071(-) A-I intron -    15342557
chr1:85647076(-) A-I intron -    15342557
chr1:85647085(-) A-I intron -    15342557
chr1:85647107(-) A-I intron -    15342557
chr1:85647113(-) A-I intron -    15342557
chr1:85647713(-) A-I intron -    15342557

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SYDE2
chr1:85623555-85623556(-) m6A 3'UTR       27773535
chr1:85624454-85624455(-) m6A CDS       24981863//27773535//22608085
chr1:85624523-85624524(-) m6A CDS       24981863//27773535//22608085
chr1:85624551-85624552(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr1:85624569-85624570(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr1:85624606-85624607(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr1:85624724-85624725(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr1:85624745-85624746(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr1:85624775-85624776(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr1:85624784-85624785(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr1:85624901-85624902(-) m6A CDS       24284625//27773535//22608085
chr1:85630248-85630249(-) m6A CDS       22608085
chr1:85643857-85643858(-) m6A CDS       27773535
chr1:85643907-85643908(-) m6A CDS       27773535//22608085
chr1:85646861-85646862(-) m6A exon//intron       27773535//22608085
chr1:85646917-85646918(-) m6A exon//intron       27773535//22608085
chr1:85646930-85646931(-) m6A exon//intron       27773535//22608085
chr1:85647840-85647841(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr1:85647894-85647895(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//22575960//22608085
chr1:85647901-85647902(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:85647912-85647913(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:85647936-85647937(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:85647975-85647976(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:85647981-85647982(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:85648001-85648002(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr1:85648037-85648038(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:85648074-85648075(-) m6A CDS//exon       24284625//25456834//24981863//27773535//22575960//22608085
chr1:85648095-85648096(-) m6A CDS//exon       24284625//25456834//24981863//27773535//22575960//22608085
chr1:85648144-85648145(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr1:85648157-85648158(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr1:85648178-85648179(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr1:85648189-85648190(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr1:85648245-85648246(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr1:85648348-85648349(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr1:85648405-85648406(-) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085
chr1:85648419-85648420(-) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085
chr1:85648440-85648441(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr1:85648450-85648451(-) m6A CDS//exon       24284625//24981863//27773535//22608085
chr1:85648501-85648502(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr1:85648588-85648589(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr1:85648666-85648667(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr1:85648682-85648683(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr1:85648740-85648741(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr1:85648751-85648752(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr1:85648833-85648834(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr1:85655768-85655769(-) m6A CDS//exon       24284625//27773535//22608085
chr1:85655793-85655794(-) m6A CDS//exon       24284625//27773535//22608085
chr1:85655800-85655801(-) m6A CDS//exon       24284625//27773535//22608085
chr1:85655880-85655881(-) m6A CDS//exon       24284625//27773535//27371828//22608085
chr1:85655899-85655900(-) m6A CDS//exon       24284625//27773535//27371828//22608085
chr1:85655918-85655919(-) m6A CDS//exon       24284625//27773535//22608085
chr1:85656122-85656123(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr1:85656140-85656141(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr1:85656211-85656212(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr1:85656391-85656392(-) m6A CDS//exon       22608085
chr1:85665954-85665955(-) m6A CDS//exon       22608085
chr1:85665978-85665979(-) m6A CDS//exon       22608085
chr1:85666161-85666162(-) m6A CDS//exon       25456834//27371828//27773536//22608085
chr1:85666233-85666234(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr1:85666284-85666285(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr1:85666335-85666336(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr1:85666453-85666454(-) m6A CDS       25456834//27371828//27773536//22575960//22608085
chr1:85666717-85666718(-) m6A 5'UTR       25456834//27371828//27773536//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SYDE2
Chromatin K562 cells     -
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B26-5p
Interactor2: SYDE2

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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