Detail Information

Basic Information:


  VIRBase ID:  

VHID00570597

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B26-5p:           ARHGAP39:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B26-5p ARHGAP39
miRBase
Accession/Entrez ID		 MIMAT0031771 80728
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - CrGAP//Vilse

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ARHGAP39
chr8:145830514(-) A-I      intronic
chr8:145765680(-) A-I      intronic
chr8:145765547(-) A-I      intronic
chr8:145830631(-) A-I      intronic
chr8:145768652(-) A-I      intronic
chr8:145765726(-) A-I      intronic
chr8:145768605(-) A-I      intronic
chr8:145768648(-) A-I      intronic
chr8:145765659(-) A-I      intronic
chr8:145775653(-) A-I      intronic
chr8:145790820(-) A-I      intronic
chr8:145830478(-) A-I      intronic
chr8:145764092(-) A-I      intronic
chr8:145766134(-) A-I      intronic
chr8:145783817(-) A-I      intronic
chr8:145766462(-) A-I      intronic
chr8:145765963(-) A-I      intronic
chr8:145768646(-) A-I      intronic
chr8:145804140(-) A-I      intronic
chr8:145768106(-) A-I      intronic
chr8:145803795(-) A-I      intronic
chr8:145765664(-) A-I      intronic
chr8:145830593(-) A-I      intronic
chr8:145775484(-) A-I      intronic
chr8:145768518(-) A-I      intronic
chr8:145768482(-) A-I      intronic
chr8:145790468(-) A-I      intronic
chr8:145766502(-) A-I      intronic
chr8:145768636(-) A-I      intronic
chr8:145775536(-) A-I      intronic
chr8:145829944(-) A-I      intronic
chr8:145765608(-) A-I      intronic
chr8:145768438(-) A-I      intronic
chr8:145768240(-) A-I      intronic
chr8:145768514(-) A-I      intronic
chr8:145775597(-) A-I      intronic
chr8:145829941(-) A-I      intronic
chr8:145768183(-) A-I      intronic
chr8:145830569(-) A-I      intronic
chr8:145764079(-) A-I      intronic
chr8:145793712(-) A-I      intronic
chr8:145764234(-) A-I      intronic
chr8:145803858(-) A-I      intronic
chr8:145766347(-) A-I      intronic
chr8:145768066(-) A-I      intronic
chr8:145766072(-) A-I      intronic
chr8:145829938(-) A-I      intronic
chr8:145764181(-) A-I      intronic
chr8:145764115(-) A-I      intronic
chr8:145775400(-) A-I      intronic
chr8:145768555(-) A-I      intronic
chr8:145766374(-) A-I      intronic
chr8:145768513(-) A-I      intronic
chr8:145765658(-) A-I      intronic
chr8:145768175(-) A-I      intronic
chr8:145764074(-) A-I      intronic
chr8:145764148(-) A-I      intronic
chr8:145765564(-) A-I      intronic
chr8:145768157(-) A-I      intronic
chr8:145765609(-) A-I      intronic
chr8:145764086(-) A-I      intronic
chr8:145775657(-) A-I      intronic
chr8:145768211(-) A-I      intronic
chr8:145766507(-) A-I      intronic
chr8:145775546(-) A-I      intronic
chr8:145768160(-) A-I      intronic
chr8:145764093(-) A-I      intronic
chr8:145768079(-) A-I      intronic
chr8:145804027(-) A-I      intronic
chr8:145766013(-) A-I      intronic
chr8:145768179(-) A-I      intronic
chr8:145765974(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ARHGAP39
chr8:145765664(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ARHGAP39
chr8:145754567-145754568(-) m6A 3'UTR       24981863
chr8:145754607-145754608(-) m6A 3'UTR       24981863
chr8:145754709-145754710(-) m6A 3'UTR       24981863
chr8:145754771-145754772(-) m6A 3'UTR       24981863
chr8:145754856-145754857(-) m6A 3'UTR       27773535
chr8:145754897-145754898(-) m6A 3'UTR       27773535
chr8:145754925-145754926(-) m6A 3'UTR       27773535
chr8:145755058-145755059(-) m6A 3'UTR       27773535
chr8:145755221-145755222(-) m6A 3'UTR       25456834//24981863
chr8:145755274-145755275(-) m6A 3'UTR       25456834//24981863
chr8:145755753-145755754(-) m6A 3'UTR       24284625//25456834//24981863//27773536
chr8:145755789-145755790(-) m6A 3'UTR       24284625//25456834//24981863//27773536//22575960
chr8:145755833-145755834(-) m6A CDS       24284625//25456834//24981863
chr8:145757768-145757769(-) m6A CDS       24284625
chr8:145758525-145758526(-) m6A CDS       24284625
chr8:145758567-145758568(-) m6A CDS       24284625
chr8:145763132-145763133(-) m6A CDS//intron       24981863//27773535
chr8:145763163-145763164(-) m6A CDS//exon//intron       24981863//27773535
chr8:145770652-145770653(-) m6A CDS//exon       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr8:145770769-145770770(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr8:145770779-145770780(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr8:145771066-145771067(-) m6A CDS       24284625//25456834//24981863//27773536
chr8:145771075-145771076(-) m6A CDS       24284625//25456834//24981863//27773536
chr8:145771186-145771187(-) m6A CDS       24284625//25456834//27371828//27773536
chr8:145772551-145772552(-) m6A CDS       24284625//25456834//27371828//27773536//22575960//22608085
chr8:145772628-145772629(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr8:145772739-145772740(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr8:145772878-145772879(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr8:145772894-145772895(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr8:145772925-145772926(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr8:145773030-145773031(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr8:145773110-145773111(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr8:145773129-145773130(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr8:145773156-145773157(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr8:145773542-145773543(-) m6A CDS       24284625//25456834//24981863//27773536//22575960//22608085
chr8:145773576-145773577(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr8:145773703-145773704(-) m6A CDS       24284625//24981863//27773536
chr8:145773737-145773738(-) m6A CDS       24284625//27773536
chr8:145773852-145773853(-) m6A CDS       24284625//27773536
chr8:145780994-145780995(-) m6A CDS       24981863//27773536
chr8:145806238-145806239(-) m6A CDS       24981863//27773536
chr8:145806251-145806252(-) m6A CDS       24981863//27773536
chr8:145806406-145806407(-) m6A CDS       27773536
chr8:145806541-145806542(-) m6A CDS       24284625//27773536
chr8:145806580-145806581(-) m6A CDS       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate ARHGAP39
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Membrane K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B26-5p
Interactor2: ARHGAP39

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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