Detail Information

Basic Information:


  VIRBase ID:  

VHID00570551

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B26-5p:           NHEJ1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B26-5p NHEJ1
miRBase
Accession/Entrez ID		 MIMAT0031771 79840
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - XLF

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR NHEJ1
chr2:220024996(-) A-I      intronic
chr2:219940225(-) A-I      3'UTR
chr2:219940912(-) A-I      3'UTR
chr2:219940361(-) A-I      3'UTR
chr2:219940346(-) A-I      3'UTR
chr2:219940344(-) A-I      3'UTR
chr2:219940342(-) A-I      3'UTR
chr2:219940226(-) A-I      3'UTR
chr2:220009837(-) A-I      intronic
chr2:220009768(-) A-I      intronic
chr2:220009720(-) A-I      intronic
chr2:220008678(-) A-I      intronic
chr2:220008671(-) A-I      intronic
chr2:220001507(-) A-I      intronic
chr2:220000322(-) A-I      intronic
chr2:219999536(-) A-I      intronic
chr2:219981365(-) A-I      intronic
chr2:219980679(-) A-I      intronic
chr2:220001372(-) A-I      intronic
chr2:219980662(-) A-I      intronic
chr2:220000520(-) A-I      intronic
chr2:220001449(-) A-I      intronic
chr2:220001489(-) A-I      intronic
chr2:220001492(-) A-I      intronic
chr2:220012862(-) A-I      intronic
chr2:220009898(-) A-I      intronic
chr2:219940234(-) A-I      3'UTR
chr2:219940362(-) A-I      3'UTR
chr2:220004673(-) A-I      intronic
chr2:220001502(-) A-I      intronic
chr2:219980687(-) A-I      intronic
chr2:220000513(-) A-I      intronic
chr2:219940277(-) A-I      3'UTR
chr2:219940330(-) A-I      3'UTR
chr2:219940352(-) A-I      3'UTR
chr2:219940224(-) A-I      3'UTR
chr2:219940351(-) A-I      3'UTR
chr2:219940233(-) A-I      3'UTR
chr2:219940296(-) A-I      3'UTR
chr2:220017663(-) A-I      intronic
chr2:220001078(-) A-I      intronic
chr2:220004674(-) A-I      intronic
chr2:219999611(-) A-I      intronic
chr2:220001355(-) A-I      intronic
chr2:219966585(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED NHEJ1
chr2:219940233(-) A-G exon 3'UTR    22484847
chr2:219940239(-) A-G exon 3'UTR    22484847
chr2:219940299(-) A-G exon 3'UTR    22484847
chr2:219966585(-) A-G intron -    22484847
chr2:220000245(-) A-G intron -    22484847
chr2:220001513(-) A-G intron -    22484847
chr2:220004673(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase NHEJ1
chr2:219940051-219940052(-) m6A 3'UTR       27773535
chr2:219940077-219940078(-) m6A 3'UTR       27773535
chr2:219940354-219940355(-) m6A 3'UTR       27773535
chr2:219940736-219940737(-) m6A 3'UTR       24209618//27773535
chr2:219940843-219940844(-) m6A 3'UTR       27773535
chr2:219940970-219940971(-) m6A 3'UTR       22608085
chr2:219941063-219941064(-) m6A 3'UTR//CDS//exon       22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate NHEJ1
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B26-5p
Interactor2: NHEJ1

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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