Detail Information

Basic Information:


  VIRBase ID:  

VHID00570306

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B26-5p:           SMPD4:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B26-5p SMPD4
miRBase
Accession/Entrez ID		 MIMAT0031771 55627
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - NEDMABA//NEDMEBA//NET13//NSMASE-3//NSMASE3//SKNY

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SMPD4
chr2:130928229(-) A-I      intronic
chr2:130916640(-) A-I      intronic
chr2:130916065(-) A-I      intronic
chr2:130916046(-) A-I      intronic
chr2:130916036(-) A-I      intronic
chr2:130916657(-) A-I      intronic
chr2:130916689(-) A-I      intronic
chr2:130917177(-) A-I      intronic
chr2:130915645(-) A-I      intronic
chr2:130916786(-) A-I      intronic
chr2:130924167(-) A-I      intronic
chr2:130916651(-) A-I      intronic
chr2:130915656(-) A-I      intronic
chr2:130924786(-) A-I      intronic
chr2:130924770(-) A-I      intronic
chr2:130928237(-) A-I      intronic
chr2:130928284(-) A-I      intronic
chr2:130928417(-) A-I      intronic
chr2:130928815(-) A-I      intronic
chr2:130931860(-) A-I      intronic
chr2:130935146(-) A-I      intronic
chr2:130927925(-) A-I      intronic
chr2:130927843(-) A-I      intronic
chr2:130927936(-) A-I      intronic
chr2:130927958(-) A-I      intronic
chr2:130928228(-) A-I      intronic
chr2:130928254(-) A-I      intronic
chr2:130927842(-) A-I      intronic
chr2:130927838(-) A-I      intronic
chr2:130915573(-) A-I      intronic
chr2:130915594(-) A-I      intronic
chr2:130916761(-) A-I      intronic
chr2:130916781(-) A-I      intronic
chr2:130916835(-) A-I      intronic
chr2:130917020(-) A-I      intronic
chr2:130917135(-) A-I      intronic
chr2:130917169(-) A-I      intronic
chr2:130923360(-) A-I      intronic
chr2:130923650(-) A-I      intronic
chr2:130923770(-) A-I      intronic
chr2:130923836(-) A-I      intronic
chr2:130924726(-) A-I      intronic
chr2:130924767(-) A-I      intronic
chr2:130927376(-) A-I      intronic
chr2:130926472(-) A-I      intronic
chr2:130926251(-) A-I      intronic
chr2:130925938(-) A-I      intronic
chr2:130924936(-) A-I      intronic
chr2:130924876(-) A-I      intronic
chr2:130924867(-) A-I      intronic
chr2:130924862(-) A-I      intronic
chr2:130924826(-) A-I      intronic
chr2:130924800(-) A-I      intronic
chr2:130924790(-) A-I      intronic
chr2:130935079(-) A-I      intronic
chr2:130926567(-) A-I      intronic
chr2:130925552(-) A-I      intronic
chr2:130937192(-) A-I      intronic
chr2:130917102(-) A-I      intronic
chr2:130926135(-) A-I      intronic
chr2:130937365(-) A-I      intronic
chr2:130916683(-) A-I      intronic
chr2:130915597(-) A-I      intronic
chr2:130937742(-) A-I      intronic
chr2:130916743(-) A-I      intronic
chr2:130934729(-) A-I      intronic
chr2:130926427(-) A-I      intronic
chr2:130923835(-) A-I      intronic
chr2:130916057(-) A-I      intronic
chr2:130916076(-) A-I      intronic
chr2:130917087(-) A-I      intronic
chr2:130927815(-) A-I      intronic
chr2:130917046(-) A-I      intronic
chr2:130916059(-) A-I      intronic
chr2:130917185(-) A-I      intronic
chr2:130915987(-) A-I      intronic
chr2:130917027(-) A-I      intronic
chr2:130937528(-) A-I      intronic
chr2:130936275(-) A-I      intronic
chr2:130916665(-) A-I      intronic
chr2:130928857(-) A-I      intronic
chr2:130928534(-) A-I      intronic
chr2:130927352(-) A-I      intronic
chr2:130917167(-) A-I      intronic
chr2:130926169(-) A-I      intronic
chr2:130917128(-) A-I      intronic
chr2:130927244(-) A-I      intronic
chr2:130923719(-) A-I      intronic
chr2:130928968(-) A-I      intronic
chr2:130916800(-) A-I      intronic
chr2:130927328(-) A-I      intronic
chr2:130928899(-) A-I      intronic
chr2:130925897(-) A-I      intronic
chr2:130923422(-) A-I      intronic
chr2:130916955(-) A-I      intronic
chr2:130916583(-) A-I      intronic
chr2:130928236(-) A-I      intronic
chr2:130915539(-) A-I      intronic
chr2:130916746(-) A-I      intronic
chr2:130916738(-) A-I      intronic
chr2:130915581(-) A-I      intronic
chr2:130923733(-) A-I      intronic
chr2:130916739(-) A-I      intronic
chr2:130934897(-) A-I      intronic
chr2:130926432(-) A-I      intronic
chr2:130928512(-) A-I      intronic
chr2:130916608(-) A-I      intronic
chr2:130926268(-) A-I      intronic
chr2:130924944(-) A-I      intronic
chr2:130916734(-) A-I      intronic
chr2:130916125(-) A-I      intronic
chr2:130928539(-) A-I      intronic
chr2:130916022(-) A-I      intronic
chr2:130915631(-) A-I      intronic
chr2:130937036(-) A-I      intronic
chr2:130916769(-) A-I      intronic
chr2:130916995(-) A-I      intronic
chr2:130916109(-) A-I      intronic
chr2:130928431(-) A-I      intronic
chr2:130937366(-) A-I      intronic
chr2:130917129(-) A-I      intronic
chr2:130923361(-) A-I      intronic
chr2:130915958(-) A-I      intronic
chr2:130915704(-) A-I      intronic
chr2:130928221(-) A-I      intronic
chr2:130916060(-) A-I      intronic
chr2:130915604(-) A-I      intronic
chr2:130934927(-) A-I      intronic
chr2:130916840(-) A-I      intronic
chr2:130928854(-) A-I      intronic
chr2:130916749(-) A-I      intronic
chr2:130926433(-) A-I      intronic
chr2:130924842(-) A-I      intronic
chr2:130927176(-) A-I      intronic
chr2:130917032(-) A-I      intronic
chr2:130916737(-) A-I      intronic
chr2:130916740(-) A-I      intronic
chr2:130916967(-) A-I      intronic
chr2:130924970(-) A-I      intronic
chr2:130926469(-) A-I      intronic
chr2:130917063(-) A-I      intronic
chr2:130916994(-) A-I      intronic
chr2:130923734(-) A-I      intronic
chr2:130915644(-) A-I      intronic
chr2:130928413(-) A-I      intronic
chr2:130916666(-) A-I      intronic
chr2:130915986(-) A-I      intronic
chr2:130922508(-) A-I      intronic
chr2:130915669(-) A-I      intronic
chr2:130916038(-) A-I      intronic
chr2:130928442(-) A-I      intronic
chr2:130916133(-) A-I      intronic
chr2:130916814(-) A-I      intronic
chr2:130925670(-) A-I      intronic
chr2:130928856(-) A-I      intronic
chr2:130925777(-) A-I      intronic
chr2:130925663(-) A-I      intronic
chr2:130924831(-) A-I      intronic
chr2:130916792(-) A-I      intronic
chr2:130926357(-) A-I      intronic
chr2:130934928(-) A-I      intronic
chr2:130926423(-) A-I      intronic
chr2:130923677(-) A-I      intronic
chr2:130915691(-) A-I      intronic
chr2:130923638(-) A-I      intronic
chr2:130927253(-) A-I      intronic
chr2:130924858(-) A-I      intronic
chr2:130924968(-) A-I      intronic
chr2:130925896(-) A-I      intronic
chr2:130917111(-) A-I      intronic
chr2:130925556(-) A-I      intronic
chr2:130917148(-) A-I      intronic
chr2:130934871(-) A-I      intronic
chr2:130937881(-) A-I      intronic
chr2:130916054(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SMPD4
chr2:130915597(-) A-I intron -    22327324
chr2:130916057(-) A-I intron -    22327324
chr2:130916058(-) A-I intron -    22327324
chr2:130916665(-) A-I intron -    22327324
chr2:130916666(-) A-I intron -    22327324
chr2:130917209(-) A-I intron -    22327324
chr2:130915669(-) A-I intron -    21960545
chr2:130916608(-) A-I intron -    21960545
chr2:130916743(-) A-I intron -    21960545
chr2:130915539(-) A-G intron -    22484847
chr2:130915581(-) A-G intron -    22484847
chr2:130915597(-) A-G intron -    22484847
chr2:130915631(-) A-G intron -    22484847
chr2:130915669(-) A-G intron -    22484847
chr2:130916014(-) A-G intron -    22484847
chr2:130916022(-) A-G intron -    22484847
chr2:130916054(-) A-G intron -    22484847
chr2:130916057(-) A-G intron -    22484847
chr2:130916058(-) A-G intron -    22484847
chr2:130916060(-) A-G intron -    22484847
chr2:130916608(-) A-G intron -    22484847
chr2:130916612(-) T-C intron -    22484847
chr2:130916653(-) A-G intron -    22484847
chr2:130916665(-) A-G intron -    22484847
chr2:130916666(-) A-G intron -    22484847
chr2:130916696(-) A-G intron -    22484847
chr2:130916700(-) A-G intron -    22484847
chr2:130916737(-) A-G intron -    22484847
chr2:130916749(-) A-G intron -    22484847
chr2:130916784(-) A-G intron -    22484847
chr2:130916795(-) A-G intron -    22484847
chr2:130916967(-) A-G intron -    22484847
chr2:130916995(-) A-G intron -    22484847
chr2:130917027(-) A-G intron -    22484847
chr2:130917032(-) A-G intron -    22484847
chr2:130917111(-) A-G intron -    22484847
chr2:130917128(-) A-G intron -    22484847
chr2:130917142(-) A-G intron -    22484847
chr2:130917167(-) A-G intron -    22484847
chr2:130917185(-) A-G intron -    22484847
chr2:130917209(-) A-G intron -    22484847
chr2:130917211(-) T-G intron -    22484847
chr2:130923341(-) A-G intron -    22484847
chr2:130923422(-) A-G intron -    22484847
chr2:130923424(-) A-G intron -    22484847
chr2:130923733(-) A-G intron -    22484847
chr2:130923760(-) A-G intron -    22484847
chr2:130923766(-) A-G intron -    22484847
chr2:130923800(-) A-G intron -    22484847
chr2:130923835(-) A-G intron -    22484847
chr2:130924698(-) G-A intron -    22484847
chr2:130924766(-) A-G intron -    22484847
chr2:130925663(-) A-G intron -    22484847
chr2:130925670(-) A-G intron -    22484847
chr2:130925897(-) A-G intron -    22484847
chr2:130926427(-) A-G intron -    22484847
chr2:130926432(-) A-G intron -    22484847
chr2:130928221(-) A-G intron -    22484847
chr2:130928413(-) A-G intron -    22484847
chr2:130928431(-) A-G intron -    22484847
chr2:130928539(-) A-G intron -    22484847
chr2:130928854(-) A-G intron -    22484847
chr2:130928856(-) A-G intron -    22484847
chr2:130928857(-) A-G intron -    22484847
chr2:130928884(-) A-G intron -    22484847
chr2:130928899(-) A-G intron -    22484847
chr2:130928968(-) A-G intron -    22484847
chr2:130934729(-) A-G intron -    22484847
chr2:130936275(-) A-G intron -    22484847
chr2:130938065(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SMPD4
chr2:130908997-130908998(-) m6A 3'UTR//exon       27773535
chr2:130909066-130909067(-) m6A 3'UTR//exon       27773535
chr2:130909154-130909155(-) m6A 3'UTR//exon       27773535
chr2:130909179-130909180(-) m6A 3'UTR//exon       27773535
chr2:130909232-130909233(-) m6A 3'UTR//exon       24981863//27773535
chr2:130909296-130909297(-) m6A 3'UTR//exon       24981863
chr2:130909394-130909395(-) m6A 3'UTR//exon       24284625//24209618//24981863//22575960//22608085
chr2:130909441-130909442(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:130909489-130909490(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:130909520-130909521(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:130909556-130909557(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:130909624-130909625(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:130909681-130909682(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr2:130909687-130909688(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22608085
chr2:130909855-130909856(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr2:130910034-130910035(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr2:130910059-130910060(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr2:130910700-130910701(-) m6A 3'UTR//CDS//exon//intron       27773535//22575960
chr2:130910921-130910922(-) m6A 3'UTR//CDS//exon//intron       27773535//22575960
chr2:130911290-130911291(-) Y 3'UTR//CDS//exon       26075521
chr2:130911324-130911325(-) m6A 3'UTR//CDS//exon       -
chr2:130911338-130911339(-) m6A 3'UTR//CDS//exon       -
chr2:130911472-130911473(-) m6A 3'UTR//CDS//exon       27773535
chr2:130911932-130911933(-) Y 3'UTR//CDS//exon       26075521
chr2:130913668-130913669(-) Y 3'UTR//CDS//exon       26075521
chr2:130925041-130925042(-) m6A 3'UTR//5'UTR//CDS//exon       27773535
chr2:130925073-130925074(-) m6A 3'UTR//5'UTR//CDS//exon       27773535
chr2:130929943-130929944(-) m6A 3'UTR//5'UTR//CDS//intron       24284625//24981863//27773535
chr2:130930014-130930015(-) m6A 3'UTR//5'UTR//CDS//intron       24284625//27773535
chr2:130930038-130930039(-) m6A 3'UTR//5'UTR//CDS//intron       24284625//27773535
chr2:130939323-130939324(-) m6A 5'UTR       -
chr2:130940020-130940021(-) m6A 5'UTR       24284625//24209618//25456834//22575960
chr2:130940136-130940137(-) m6A 5'UTR       24284625//24209618
chr2:130940260-130940261(-) m6A 5'UTR       24284625
chr2:130940314-130940315(-) m6A 5'UTR       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SMPD4
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B26-5p
Interactor2: SMPD4

Evidence Support:


Prediction-Evidence miRanda//PITA
Support Database VmiReg

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