Detail Information

Basic Information:


  VIRBase ID:  

VHID00570093

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B26-5p:           TRAPPC3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B26-5p TRAPPC3
miRBase
Accession/Entrez ID		 MIMAT0031771 27095
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - BET3

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR TRAPPC3
chr1:36609780(-) A-I      intronic
chr1:36604856(-) A-I      intronic
chr1:36604832(-) A-I      intronic
chr1:36609767(-) A-I      intronic
chr1:36604991(-) A-I      intronic
chr1:36614120(-) A-I      intronic
chr1:36604870(-) A-I      intronic
chr1:36604790(-) A-I      intronic
chr1:36613145(-) A-I      intronic
chr1:36604843(-) A-I      intronic
chr1:36606659(-) A-I      intronic
chr1:36605021(-) A-I      intronic
chr1:36604986(-) A-I      intronic
chr1:36604963(-) A-I      intronic
chr1:36604960(-) A-I      intronic
chr1:36604954(-) A-I      intronic
chr1:36604953(-) A-I      intronic
chr1:36604937(-) A-I      intronic
chr1:36604929(-) A-I      intronic
chr1:36604891(-) A-I      intronic
chr1:36604812(-) A-I      intronic
chr1:36604797(-) A-I      intronic
chr1:36604590(-) A-I      intronic
chr1:36604574(-) A-I      intronic
chr1:36604555(-) A-I      intronic
chr1:36604553(-) A-I      intronic
chr1:36604537(-) A-I      intronic
chr1:36604475(-) A-I      intronic
chr1:36604427(-) A-I      intronic
chr1:36604402(-) A-I      intronic
chr1:36604389(-) A-I      intronic
chr1:36604388(-) A-I      intronic
chr1:36604373(-) A-I      intronic
chr1:36613912(-) A-I      intronic
chr1:36613199(-) A-I      intronic
chr1:36610074(-) A-I      intronic
chr1:36613176(-) A-I      intronic
chr1:36613163(-) A-I      intronic
chr1:36613136(-) A-I      intronic
chr1:36613126(-) A-I      intronic
chr1:36613097(-) A-I      intronic
chr1:36612877(-) A-I      intronic
chr1:36612867(-) A-I      intronic
chr1:36612839(-) A-I      intronic
chr1:36612740(-) A-I      intronic
chr1:36612686(-) A-I      intronic
chr1:36612127(-) A-I      intronic
chr1:36612030(-) A-I      intronic
chr1:36611818(-) A-I      intronic
chr1:36611808(-) A-I      intronic
chr1:36611752(-) A-I      intronic
chr1:36611539(-) A-I      intronic
chr1:36611507(-) A-I      intronic
chr1:36611503(-) A-I      intronic
chr1:36611486(-) A-I      intronic
chr1:36610925(-) A-I      intronic
chr1:36610903(-) A-I      intronic
chr1:36610797(-) A-I      intronic
chr1:36609781(-) A-I      intronic
chr1:36609777(-) A-I      intronic
chr1:36610790(-) A-I      intronic
chr1:36610761(-) A-I      intronic
chr1:36610739(-) A-I      intronic
chr1:36610738(-) A-I      intronic
chr1:36610734(-) A-I      intronic
chr1:36609761(-) A-I      intronic
chr1:36609726(-) A-I      intronic
chr1:36604606(-) A-I      intronic
chr1:36611844(-) A-I      intronic
chr1:36612848(-) A-I      intronic
chr1:36612840(-) A-I      intronic
chr1:36610179(-) A-I      intronic
chr1:36613133(-) A-I      intronic
chr1:36610050(-) A-I      intronic
chr1:36610002(-) A-I      intronic
chr1:36610909(-) A-I      intronic
chr1:36612902(-) A-I      intronic
chr1:36604580(-) A-I      intronic
chr1:36610902(-) A-I      intronic
chr1:36604624(-) A-I      intronic
chr1:36610826(-) A-I      intronic
chr1:36614030(-) A-I      intronic
chr1:36612062(-) A-I      intronic
chr1:36604789(-) A-I      intronic
chr1:36611874(-) A-I      intronic
chr1:36610221(-) A-I      intronic
chr1:36612774(-) A-I      intronic
chr1:36604883(-) A-I      intronic
chr1:36610794(-) A-I      intronic
chr1:36610155(-) A-I      intronic
chr1:36611862(-) A-I      intronic
chr1:36612802(-) A-I      intronic
chr1:36604387(-) A-I      intronic
chr1:36604952(-) A-I      intronic
chr1:36604469(-) A-I      intronic
chr1:36609806(-) A-I      intronic
chr1:36612069(-) A-I      intronic
chr1:36612695(-) A-I      intronic
chr1:36611546(-) A-I      intronic
chr1:36611544(-) A-I      intronic
chr1:36605029(-) A-I      intronic
chr1:36611513(-) A-I      intronic
chr1:36613168(-) A-I      intronic
chr1:36612158(-) A-I      intronic
chr1:36604996(-) A-I      intronic
chr1:36611547(-) A-I      intronic
chr1:36610787(-) A-I      intronic
chr1:36604598(-) A-I      intronic
chr1:36604525(-) A-I      intronic
chr1:36604897(-) A-I      intronic
chr1:36612708(-) A-I      intronic
chr1:36612766(-) A-I      intronic
chr1:36612918(-) A-I      intronic
chr1:36613162(-) A-I      intronic
chr1:36604852(-) A-I      intronic
chr1:36613159(-) A-I      intronic
chr1:36609706(-) A-I      intronic
chr1:36612036(-) A-I      intronic
chr1:36610127(-) A-I      intronic
chr1:36612987(-) A-I      intronic
chr1:36610160(-) A-I      intronic
chr1:36612722(-) A-I      intronic
chr1:36609989(-) A-I      intronic
chr1:36611705(-) A-I      intronic
chr1:36610084(-) A-I      intronic
chr1:36611791(-) A-I      intronic
chr1:36608589(-) A-I      intronic
chr1:36612800(-) A-I      intronic
chr1:36612065(-) A-I      intronic
chr1:36605036(-) A-I      intronic
chr1:36604375(-) A-I      intronic
chr1:36612072(-) A-I      intronic
chr1:36613913(-) A-I      intronic
chr1:36614148(-) A-I      intronic
chr1:36605038(-) A-I      intronic
chr1:36613857(-) A-I      intronic
chr1:36609803(-) A-I      intronic
chr1:36604836(-) A-I      intronic
chr1:36605030(-) A-I      intronic
chr1:36611543(-) A-I      intronic
chr1:36612808(-) A-I      intronic
chr1:36611746(-) A-I      intronic
chr1:36608597(-) A-I      intronic
chr1:36607447(-) A-I      intronic
chr1:36610133(-) A-I      intronic
chr1:36613818(-) A-I      intronic
chr1:36612872(-) A-I      intronic
chr1:36612135(-) A-I      intronic
chr1:36604466(-) A-I      intronic
chr1:36613014(-) A-I      intronic
chr1:36604577(-) A-I      intronic
chr1:36609983(-) A-I      intronic
chr1:36610708(-) A-I      intronic
chr1:36614084(-) A-I      intronic
chr1:36612707(-) A-I      intronic
chr1:36604896(-) A-I      intronic
chr1:36612075(-) A-I      intronic
chr1:36604962(-) A-I      intronic
chr1:36610825(-) A-I      intronic
chr1:36610719(-) A-I      intronic
chr1:36607459(-) A-I      intronic
chr1:36612717(-) A-I      intronic
chr1:36604372(-) A-I      intronic
chr1:36610699(-) A-I      intronic
chr1:36613137(-) A-I      intronic
chr1:36610073(-) A-I      intronic
chr1:36604977(-) A-I      intronic
chr1:36609967(-) A-I      intronic
chr1:36610057(-) A-I      intronic
chr1:36610835(-) A-I      intronic
chr1:36611776(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED TRAPPC3
chr1:36605029(-) A-I intron -    21960545
chr1:36604577(-) A-G intron -    22484847
chr1:36604580(-) A-G intron -    22484847
chr1:36604598(-) A-G intron -    22484847
chr1:36604606(-) A-G intron -    22484847
chr1:36604852(-) A-G intron -    22484847
chr1:36604896(-) A-G intron -    22484847
chr1:36604897(-) A-G intron -    22484847
chr1:36604952(-) A-G intron -    22484847
chr1:36604962(-) A-G intron -    22484847
chr1:36605029(-) A-G intron -    22484847
chr1:36609890(-) G-T intron -    22484847
chr1:36609983(-) A-G intron -    22484847
chr1:36610057(-) A-G intron -    22484847
chr1:36610073(-) A-G intron -    22484847
chr1:36610155(-) A-G intron -    22484847
chr1:36610160(-) A-G intron -    22484847
chr1:36610179(-) A-G intron -    22484847
chr1:36611746(-) A-G intron -    22484847
chr1:36612135(-) A-G intron -    22484847
chr1:36612707(-) A-G intron -    22484847
chr1:36612717(-) A-G intron -    22484847
chr1:36612800(-) A-G intron -    22484847
chr1:36612802(-) A-G intron -    22484847
chr1:36612808(-) A-G intron -    22484847
chr1:36612840(-) A-G intron -    22484847
chr1:36612848(-) A-G intron -    22484847
chr1:36612872(-) A-G intron -    22484847
chr1:36612918(-) A-G intron -    22484847
chr1:36613162(-) A-G intron -    22484847
chr1:36613168(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase TRAPPC3
chr1:36602195-36602196(-) m6A 3'UTR//exon       27773535
chr1:36602306-36602307(-) m6A 3'UTR//exon       24209618//27773535
chr1:36602496-36602497(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//22608085
chr1:36602534-36602535(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//22608085
chr1:36602550-36602551(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//22608085
chr1:36602650-36602651(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr1:36602708-36602709(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:36602724-36602725(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr1:36602828-36602829(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27371828//27773536//22575960//22608085
chr1:36602888-36602889(-) m6A CDS//exon       24284625//24209618//24981863//27371828//27773536//22575960//22608085
chr1:36614962-36614963(-) m6A 5'UTR//CDS//exon//intron       24284625//25456834//24981863//27371828//27773536
chr1:36621487-36621488(-) m6A 5'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate TRAPPC3
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B26-5p
Interactor2: TRAPPC3

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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