Basic Information:

  VIRBase ID:  

VHID00569107

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B26-5p:  MIMAT0031771          COL5A1:  NM_000093     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hbv-miR-B26-5p	COL5A1
miRBase Accession/Entrez ID	MIMAT0031771	1289
Organism	Macacine alphaherpesvirus 1 (CeHV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	EDSC//EDSCL1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	COL5A1	chr9:137686073(+) A-I      intronic chr9:137666943(+) A-I      intronic chr9:137557822(+) A-I      intronic chr9:137557837(+) A-I      intronic chr9:137557853(+) A-I      intronic chr9:137634139(+) A-I      intronic chr9:137686087(+) A-I      intronic chr9:137686101(+) A-I      intronic chr9:137633776(+) A-I      intronic chr9:137634138(+) A-I      intronic chr9:137684473(+) A-I      intronic chr9:137684286(+) A-I      intronic chr9:137684308(+) A-I      intronic chr9:137684398(+) A-I      intronic chr9:137684245(+) A-I      intronic chr9:137666938(+) A-I      intronic chr9:137686078(+) A-I      intronic chr9:137588206(+) A-I      intronic chr9:137588212(+) A-I      intronic chr9:137685919(+) A-I      intronic chr9:137686122(+) A-I      intronic chr9:137686116(+) A-I      intronic chr9:137684325(+) A-I      intronic chr9:137684322(+) A-I      intronic chr9:137684401(+) A-I      intronic chr9:137684326(+) A-I      intronic chr9:137686060(+) A-I      intronic chr9:137686016(+) A-I      intronic chr9:137556868(+) A-I      intronic chr9:137684391(+) A-I      intronic chr9:137589765(+) A-I      intronic chr9:137685963(+) A-I      intronic chr9:137685924(+) A-I      intronic chr9:137684411(+) A-I      intronic chr9:137685986(+) A-I      intronic chr9:137686112(+) A-I      intronic chr9:137686052(+) A-I      intronic chr9:137684291(+) A-I      intronic chr9:137684485(+) A-I      intronic chr9:137685918(+) A-I      intronic chr9:137686088(+) A-I      intronic chr9:137684321(+) A-I      intronic chr9:137684348(+) A-I      intronic chr9:137686108(+) A-I      intronic chr9:137684347(+) A-I      intronic chr9:137684302(+) A-I      intronic chr9:137684301(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	COL5A1	chr9:137684347(+) A-I intron -    22327324 chr9:137684401(+) A-I intron -    22327324 chr9:137684485(+) A-I intron -    22327324 chr9:137685918(+) A-I intron -    22327324 chr9:137685919(+) A-I intron -    22327324 chr9:137686088(+) A-I intron -    22327324 chr9:137686116(+) A-I intron -    22327324 chr9:137686052(+) A-I intron -    21960545 chr9:137668674(+) A-C intron -    22484847 chr9:137684325(+) A-G intron -    22484847 chr9:137684347(+) A-G intron -    22484847 chr9:137684401(+) A-G intron -    22484847 chr9:137684485(+) A-G intron -    22484847 chr9:137685918(+) A-G intron -    22484847 chr9:137685919(+) A-G intron -    22484847 chr9:137685924(+) A-G intron -    22484847 chr9:137685963(+) A-G intron -    22484847 chr9:137686052(+) A-G intron -    22484847 chr9:137686079(+) A-G intron -    22484847 chr9:137686088(+) A-G intron -    22484847 chr9:137686108(+) A-G intron -    22484847 chr9:137686116(+) A-G intron -    22484847 chr9:137686122(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	COL5A1	chr9:137533681-137533682(+) m6A 5'UTR       24284625//25456834//24981863//22575960 chr9:137533870-137533871(+) m6A 5'UTR       24209618//22575960 chr9:137600532-137600533(+) m6A exon//intron       24981863 chr9:137600555-137600556(+) m6A exon//intron       24981863 chr9:137600561-137600562(+) m6A exon//intron       24981863 chr9:137600588-137600589(+) m6A exon//intron       - chr9:137600622-137600623(+) m6A exon//intron       - chr9:137600715-137600716(+) m6A exon//intron       24284625 chr9:137600751-137600752(+) m6A exon//intron       24284625 chr9:137619142-137619143(+) m6A CDS       22575960 chr9:137619223-137619224(+) m6A CDS       24284625//24981863//22575960 chr9:137620542-137620543(+) m6A CDS       24284625//24981863//26404942//22575960 chr9:137620573-137620574(+) m6A CDS       24284625//24981863//26404942//22575960 chr9:137620582-137620583(+) m6A CDS       24284625//24981863//26404942//22575960 chr9:137620635-137620636(+) m6A CDS       24284625//25456834//24981863//26404942//22575960 chr9:137622123-137622124(+) m6A CDS       24284625//25456834//24981863//22575960 chr9:137622166-137622167(+) m6A CDS       24284625//24981863//22575960 chr9:137622190-137622191(+) m6A CDS       24284625//24981863//22575960 chr9:137622244-137622245(+) m6A CDS       24284625//24981863//22575960 chr9:137622262-137622263(+) m6A CDS       24284625//24981863//22575960 chr9:137623408-137623409(+) m6A CDS       24284625//24209618//24981863//22575960 chr9:137623420-137623421(+) m6A CDS       24284625//24981863//22575960 chr9:137623461-137623462(+) Gm CDS//exon       - chr9:137623486-137623487(+) m6A CDS//exon       24284625//24981863//22575960 chr9:137623924-137623925(+) m6A CDS//exon       24284625//24981863//22575960 chr9:137623954-137623955(+) m6A CDS//exon       24284625//24981863//22575960 chr9:137623979-137623980(+) m6A exon//intron       24284625//24981863 chr9:137630612-137630613(+) m6A CDS       24284625 chr9:137630640-137630641(+) m6A CDS       24284625 chr9:137642444-137642445(+) m6A CDS       24284625 chr9:137644448-137644449(+) m6A CDS       24284625 chr9:137644478-137644479(+) m6A CDS       24284625 chr9:137648648-137648649(+) m6A CDS       24284625//24209618//22575960 chr9:137653799-137653800(+) m6A CDS       24284625//24209618//25456834//22575960 chr9:137657573-137657574(+) m6A CDS       24284625//24209618//22575960 chr9:137658874-137658875(+) m6A CDS       24284625//24209618 chr9:137660269-137660270(+) m6A CDS       24284625//24209618 chr9:137660302-137660303(+) m6A CDS       24284625 chr9:137664637-137664638(+) m6A CDS       24284625 chr9:137672156-137672157(+) Cm intron       - chr9:137674543-137674544(+) m6A CDS       24284625//24209618//24981863//22575960 chr9:137676926-137676927(+) m6A CDS       24284625//24209618//25456834//24981863 chr9:137677845-137677846(+) m6A CDS       24284625//24209618//25456834//24981863 chr9:137677881-137677882(+) m6A CDS       24284625//24209618//25456834//24981863 chr9:137677887-137677888(+) m6A CDS       24284625//24209618//25456834//24981863 chr9:137686930-137686931(+) m6A CDS       24284625//24209618//25456834//24981863 chr9:137686947-137686948(+) m6A CDS       24284625//25456834//24981863//22575960 chr9:137688695-137688696(+) m6A CDS       24284625//22575960 chr9:137688704-137688705(+) m6A CDS       24284625//22575960 chr9:137688713-137688714(+) m6A CDS       24284625//22575960 chr9:137688731-137688732(+) m6A CDS       24284625//22575960 chr9:137690273-137690274(+) m6A CDS       24284625//22575960 chr9:137690282-137690283(+) m6A CDS       24284625//22575960 chr9:137690291-137690292(+) m6A CDS       24284625//22575960 chr9:137690304-137690305(+) m6A CDS       24284625//22575960 chr9:137693814-137693815(+) m6A CDS       24284625//22575960 chr9:137694362-137694363(+) Cm intron       - chr9:137694789-137694790(+) m6A CDS       24284625//22575960 chr9:137694801-137694802(+) m6A CDS       24284625//22575960 chr9:137696887-137696888(+) m6A CDS       24284625//25456834//22575960 chr9:137697017-137697018(+) m6A CDS       24284625//25456834//24981863//22575960 chr9:137698093-137698094(+) m6A CDS       24284625//25456834//24981863//22575960 chr9:137698108-137698109(+) m6A CDS       24284625//25456834//24981863//22575960 chr9:137701139-137701140(+) Am intron       - chr9:137702140-137702141(+) m6A CDS//exon       24284625//25456834//24981863 chr9:137702150-137702151(+) m6A CDS//exon       24284625//25456834//24981863 chr9:137703222-137703223(+) m6A CDS       24284625 chr9:137703420-137703421(+) m6A CDS       24284625//22575960 chr9:137704305-137704306(+) m6A CDS       24284625//22575960 chr9:137704327-137704328(+) m6A CDS       24284625//22575960 chr9:137704479-137704480(+) m6A CDS       24284625//22575960 chr9:137704535-137704536(+) m6A CDS       24284625//24209618//22575960 chr9:137706644-137706645(+) m6A CDS       24284625//24209618//25456834//22575960 chr9:137706698-137706699(+) m6A CDS       24284625//24209618//25456834//22575960 chr9:137706707-137706708(+) m6A CDS       24284625//24209618//25456834//22575960 chr9:137707821-137707822(+) m6A CDS       24284625 chr9:137708894-137708895(+) m6A CDS       24284625 chr9:137709655-137709656(+) m6A CDS       24284625 chr9:137710698-137710699(+) m6A CDS       25456834 chr9:137712065-137712066(+) m6A CDS       - chr9:137714776-137714777(+) m6A exon//intron       - chr9:137714805-137714806(+) m6A exon//intron       - chr9:137715299-137715300(+) m6A CDS//exon       24284625 chr9:137716503-137716504(+) m6A CDS//exon       24284625 chr9:137716545-137716546(+) m6A CDS//exon       24284625 chr9:137716554-137716555(+) m6A CDS//exon       24284625 chr9:137716647-137716648(+) m6A CDS//exon       24284625//22575960 chr9:137716668-137716669(+) m6A CDS//exon       24284625//22575960 chr9:137721849-137721850(+) m6A CDS//exon//intron       24284625 chr9:137721886-137721887(+) m6A CDS//exon//intron       24284625 chr9:137721929-137721930(+) m6A exon//intron       24284625 chr9:137722134-137722135(+) m6A exon//intron       - chr9:137722160-137722161(+) m6A exon//intron       - chr9:137724648-137724649(+) m6A exon//intron       - chr9:137734072-137734073(+) m6A CDS       24284625//24209618//25456834//24981863//22575960 chr9:137734237-137734238(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr9:137734303-137734304(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr9:137734320-137734321(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr9:137734503-137734504(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22575960 chr9:137734517-137734518(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22575960 chr9:137734790-137734791(+) m6A 3'UTR       24284625//24981863 chr9:137734810-137734811(+) m6A 3'UTR       24284625//24981863//22575960 chr9:137735273-137735274(+) m6A 3'UTR       24284625//22575960 chr9:137735341-137735342(+) m6A 3'UTR       24284625//24981863//22575960 chr9:137735346-137735347(+) Am 3'UTR       - chr9:137735452-137735453(+) m6A 3'UTR       24284625//24981863//22575960 chr9:137735479-137735480(+) m6A 3'UTR       24284625//24981863//22575960 chr9:137735640-137735641(+) m6A 3'UTR       24284625//24981863//22575960 chr9:137735773-137735774(+) m6A 3'UTR       24284625//25456834//24981863//22575960 chr9:137735823-137735824(+) m6A 3'UTR       24284625//25456834//24981863//22575960 chr9:137736001-137736002(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr9:137736019-137736020(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr9:137736024-137736025(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960 chr9:137736178-137736179(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr9:137736199-137736200(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr9:137736313-137736314(+) m6A 3'UTR       24284625//24209618//24981863//22575960 chr9:137736341-137736342(+) m6A 3'UTR       24284625//24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	COL5A1	Cytosol HeLa-S3 cells     - Exosome Blood     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hbv-miR-B26-5p
Interactor2: COL5A1

Evidence Support:

Prediction-Evidence	miRanda//PITA
Support Database	VmiReg