Basic Information:

  VIRBase ID:  

VHID00566686

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B19-5p:  MIMAT0031769          FGD2:  NM_173558     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hbv-miR-B19-5p	FGD2
miRBase Accession/Entrez ID	MIMAT0031769	221472
Organism	Macacine alphaherpesvirus 1 (CeHV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	ZFYVE4

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	FGD2	chr6:36994690(+) A-I      intronic chr6:36994673(+) A-I      intronic chr6:36994669(+) A-I      intronic chr6:36994664(+) A-I      intronic chr6:36996559(+) A-I      3'UTR chr6:36996545(+) A-I      3'UTR chr6:36996619(+) A-I      3'UTR chr6:36996524(+) A-I      3'UTR chr6:36996514(+) A-I      3'UTR chr6:36996632(+) A-I      3'UTR chr6:36996510(+) A-I      3'UTR chr6:36996485(+) A-I      3'UTR chr6:36996464(+) A-I      3'UTR chr6:36994599(+) A-I      intronic chr6:36994778(+) A-I      intronic chr6:36996462(+) A-I      3'UTR chr6:36996416(+) A-I      3'UTR chr6:36996410(+) A-I      3'UTR chr6:36996511(+) A-I      3'UTR chr6:36996422(+) A-I      3'UTR chr6:36996590(+) A-I      3'UTR chr6:36996620(+) A-I      3'UTR chr6:36996568(+) A-I      3'UTR chr6:36996502(+) A-I      3'UTR chr6:36996582(+) A-I      3'UTR chr6:36996551(+) A-I      3'UTR chr6:36996414(+) A-I      3'UTR chr6:36996659(+) A-I      3'UTR chr6:36996550(+) A-I      3'UTR chr6:36994796(+) A-I      intronic chr6:36980279(+) A-I      intronic chr6:36994556(+) A-I      intronic chr6:36980354(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	FGD2	chr6:36996620(+) A-I intron -    22327324 chr6:36977788(+) T-A intron -    22484847 chr6:36977789(+) C-A intron -    22484847 chr6:36980279(+) A-G intron -    22484847 chr6:36980354(+) A-G intron -    22484847 chr6:36980841(+) A-G intron -    22484847 chr6:36996582(+) A-G intron -    22484847 chr6:36996620(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	FGD2	chr6:36995925-36995926(+) m6A 3'UTR//CDS//exon       - chr6:36995981-36995982(+) m6A 3'UTR//exon       - chr6:36995999-36996000(+) m6A 3'UTR//exon       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	FGD2	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):

Interactor1: hbv-miR-B19-5p
Interactor2: FGD2

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg