Detail Information

Basic Information:


  VIRBase ID:  

VHID00566162

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B19-5p:           RAB17:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B19-5p RAB17
miRBase
Accession/Entrez ID		 MIMAT0031769 64284
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RAB17
chr2:238489127(-) A-I      intronic
chr2:238489219(-) A-I      intronic
chr2:238489789(-) A-I      intronic
chr2:238489216(-) A-I      intronic
chr2:238489820(-) A-I      intronic
chr2:238489213(-) A-I      intronic
chr2:238489775(-) A-I      intronic
chr2:238489787(-) A-I      intronic
chr2:238489816(-) A-I      intronic
chr2:238489786(-) A-I      intronic
chr2:238489167(-) A-I      intronic
chr2:238490173(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RAB17
chr2:238489166(-) A-I intron -    21960545
chr2:238489167(-) A-I intron -    21960545
chr2:238489816(-) A-I intron -    21960545
chr2:238490040(-) A-I intron -    21960545

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RAB17
chr2:238483038-238483039(-) m6A 3'UTR//exon       25456834//27773535
chr2:238483363-238483364(-) m6A 3'UTR//exon//intron       24284625//25456834//24981863//27773535//22575960
chr2:238483498-238483499(-) m6A 3'UTR//exon//intron       24284625
chr2:238483521-238483522(-) m6A 3'UTR//exon//intron       24284625
chr2:238483630-238483631(-) m6A 3'UTR//exon//intron       -
chr2:238483701-238483702(-) m6A 3'UTR//CDS//exon//intron       24284625//27773535
chr2:238484061-238484062(-) m6A 3'UTR//CDS//exon//intron       24284625//27773535
chr2:238484066-238484067(-) m6A 3'UTR//CDS//exon//intron       24284625//27773535
chr2:238484077-238484078(-) m6A 3'UTR//CDS//exon//intron       24284625//27773535
chr2:238484154-238484155(-) m6A exon//intron       24284625//27773535
chr2:238484166-238484167(-) m6A exon//intron       24284625//27773535
chr2:238484184-238484185(-) m6A exon//intron       24284625//25456834//27773535
chr2:238484250-238484251(-) m6A exon//intron       24284625//25456834//24981863
chr2:238484261-238484262(-) m6A exon//intron       24284625//25456834//24981863
chr2:238484381-238484382(-) m6A exon//intron       25456834
chr2:238484395-238484396(-) m6A exon//intron       25456834
chr2:238485253-238485254(-) m6A CDS//intron       27773535
chr2:238485287-238485288(-) m6A CDS//intron       27773535
chr2:238485306-238485307(-) m6A CDS//intron       27773535
chr2:238485316-238485317(-) m6A CDS//intron       27773535
chr2:238485325-238485326(-) m6A CDS//intron       27773535
chr2:238485930-238485931(-) m6A 3'UTR//CDS//exon//intron       27773535
chr2:238485990-238485991(-) m6A 3'UTR//5'UTR//CDS//exon//intron       27773535
chr2:238486445-238486446(-) m6A exon//intron       25456834
chr2:238486545-238486546(-) m6A exon//intron       24284625//25456834//27773535
chr2:238486551-238486552(-) m6A exon//intron       25456834//27773535
chr2:238487492-238487493(-) m6A exon//intron       27773535
chr2:238487518-238487519(-) m6A exon//intron       27773535
chr2:238487623-238487624(-) m6A exon//intron       27773535
chr2:238487701-238487702(-) m6A exon//intron       27773535
chr2:238487780-238487781(-) m6A exon//intron       27773535
chr2:238487855-238487856(-) m6A exon//intron       27773535
chr2:238487862-238487863(-) m6A exon//intron       27773535
chr2:238487897-238487898(-) m6A exon//intron       25456834//27773535
chr2:238487938-238487939(-) m6A exon//intron       25456834//27773535
chr2:238487960-238487961(-) m6A exon//intron       24284625//25456834//27773535
chr2:238488004-238488005(-) m6A exon//intron       24284625//25456834//27773535
chr2:238488020-238488021(-) m6A exon//intron       24284625//25456834//27773535
chr2:238488048-238488049(-) m6A exon//intron       24284625//25456834//27773535//22575960
chr2:238488120-238488121(-) m6A exon//intron       24284625//25456834//24981863//27773535//22575960
chr2:238488156-238488157(-) m6A exon//intron       24284625//25456834//24981863//27773535
chr2:238488186-238488187(-) m6A exon//intron       24284625//25456834//24981863//27773535
chr2:238494120-238494121(-) m6A exon//intron       27773535
chr2:238494778-238494779(-) m6A CDS//exon//intron       24284625//27773535
chr2:238499112-238499113(-) m6A 5'UTR//exon       24284625//27773535
chr2:238499162-238499163(-) m6A 5'UTR//exon       24284625//27773535
chr2:238499181-238499182(-) m6A 5'UTR//exon       24284625//27773535
chr2:238499204-238499205(-) m6A 5'UTR//exon       24284625//27773535
chr2:238499216-238499217(-) m6A 5'UTR//exon       24284625//27773535
chr2:238499368-238499369(-) m6A 5'UTR//exon       24284625//25456834//24981863//22575960
chr2:238499381-238499382(-) m6A 5'UTR//exon       24284625//25456834//24981863//22575960
chr2:238499485-238499486(-) m6A 5'UTR//exon       24284625//25456834//24981863//22575960
chr2:238499538-238499539(-) m6A 5'UTR//exon       24284625//25456834//24981863//27773535//22575960
chr2:238499572-238499573(-) m6A 5'UTR//exon       24284625//25456834//24981863//27773535//22575960

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate RAB17
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B19-5p
Interactor2: RAB17

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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