Detail Information

Basic Information:


  VIRBase ID:  

VHID00565956

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B19-5p:           C1orf109:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B19-5p C1orf109
miRBase
Accession/Entrez ID		 MIMAT0031769 54955
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR C1orf109
chr1:38150228(-) A-I      intronic
chr1:38150128(-) A-I      intronic
chr1:38152681(-) A-I      intronic
chr1:38154538(-) A-I      intronic
chr1:38150165(-) A-I      intronic
chr1:38152671(-) A-I      intronic
chr1:38150121(-) A-I      intronic
chr1:38152967(-) A-I      intronic
chr1:38152647(-) A-I      intronic
chr1:38151339(-) A-I      intronic
chr1:38151238(-) A-I      intronic
chr1:38150252(-) A-I      intronic
chr1:38150205(-) A-I      intronic
chr1:38150204(-) A-I      intronic
chr1:38150191(-) A-I      intronic
chr1:38150183(-) A-I      intronic
chr1:38150111(-) A-I      intronic
chr1:38153867(-) A-I      intronic
chr1:38154530(-) A-I      intronic
chr1:38153041(-) A-I      intronic
chr1:38153204(-) A-I      intronic
chr1:38154592(-) A-I      intronic
chr1:38152964(-) A-I      intronic
chr1:38152505(-) A-I      intronic
chr1:38153892(-) A-I      intronic
chr1:38151149(-) A-I      intronic
chr1:38151190(-) A-I      intronic
chr1:38150229(-) A-I      intronic
chr1:38151185(-) A-I      intronic
chr1:38151278(-) A-I      intronic
chr1:38151230(-) A-I      intronic
chr1:38151136(-) A-I      intronic
chr1:38151124(-) A-I      intronic
chr1:38151216(-) A-I      intronic
chr1:38151168(-) A-I      intronic
chr1:38151181(-) A-I      intronic
chr1:38151229(-) A-I      intronic
chr1:38151235(-) A-I      intronic
chr1:38151224(-) A-I      intronic
chr1:38152613(-) A-I      intronic
chr1:38153622(-) A-I      intronic
chr1:38151022(-) A-I      intronic
chr1:38150990(-) A-I      intronic
chr1:38152603(-) A-I      intronic
chr1:38153906(-) A-I      intronic
chr1:38153351(-) A-I      intronic
chr1:38151191(-) A-I      intronic
chr1:38152537(-) A-I      intronic
chr1:38151236(-) A-I      intronic
chr1:38154466(-) A-I      intronic
chr1:38150169(-) A-I      intronic
chr1:38153219(-) A-I      intronic
chr1:38152720(-) A-I      intronic
chr1:38153334(-) A-I      intronic
chr1:38151239(-) A-I      intronic
chr1:38152646(-) A-I      intronic
chr1:38154514(-) A-I      intronic
chr1:38154586(-) A-I      intronic
chr1:38151233(-) A-I      intronic
chr1:38153893(-) A-I      intronic
chr1:38154591(-) A-I      intronic
chr1:38151315(-) A-I      intronic
chr1:38154555(-) A-I      intronic
chr1:38151128(-) A-I      intronic
chr1:38151228(-) A-I      intronic
chr1:38153796(-) A-I      intronic
chr1:38151242(-) A-I      intronic
chr1:38150286(-) A-I      intronic
chr1:38150965(-) A-I      intronic
chr1:38152706(-) A-I      intronic
chr1:38150051(-) A-I      intronic
chr1:38154490(-) A-I      intronic
chr1:38151237(-) A-I      intronic
chr1:38153594(-) A-I      intronic
chr1:38152867(-) A-I      intronic
chr1:38151240(-) A-I      intronic
chr1:38154543(-) A-I      intronic
chr1:38152523(-) A-I      intronic
chr1:38151167(-) A-I      intronic
chr1:38153248(-) A-I      intronic
chr1:38150288(-) A-I      intronic
chr1:38153655(-) A-I      intronic
chr1:38152969(-) A-I      intronic
chr1:38152827(-) A-I      intronic
chr1:38152896(-) A-I      intronic
chr1:38151006(-) A-I      intronic
chr1:38153296(-) A-I      intronic
chr1:38153237(-) A-I      intronic
chr1:38152831(-) A-I      intronic
chr1:38152680(-) A-I      intronic
chr1:38152485(-) A-I      intronic
chr1:38154513(-) A-I      intronic
chr1:38152665(-) A-I      intronic
chr1:38153277(-) A-I      intronic
chr1:38150918(-) A-I      intronic
chr1:38153758(-) A-I      intronic
chr1:38151086(-) A-I      intronic
chr1:38151010(-) A-I      intronic
chr1:38152587(-) A-I      intronic
chr1:38151341(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED C1orf109
chr1:38153655(-) A-I intron -    22327324
chr1:38153893(-) A-I intron -    22327324
chr1:38151068(-) A-I intron -    22028664
chr1:38151124(-) A-I intron -    22028664
chr1:38151136(-) A-I intron -    22028664
chr1:38151149(-) A-I intron -    22028664
chr1:38151167(-) A-I intron -    22028664
chr1:38151168(-) A-I intron -    22028664
chr1:38151181(-) A-I intron -    22028664
chr1:38151185(-) A-I intron -    22028664
chr1:38151190(-) A-I intron -    22028664
chr1:38151191(-) A-I intron -    22028664
chr1:38151216(-) A-I intron -    22028664
chr1:38151220(-) A-I intron -    22028664
chr1:38151224(-) A-I intron -    22028664
chr1:38151228(-) A-I intron -    22028664
chr1:38151229(-) A-I intron -    22028664
chr1:38151230(-) A-I intron -    22028664
chr1:38151233(-) A-I intron -    22028664
chr1:38151235(-) A-I intron -    22028664
chr1:38151236(-) A-I intron -    22028664
chr1:38151239(-) A-I intron -    22028664
chr1:38151240(-) A-I intron -    22028664
chr1:38151278(-) A-I intron -    22028664
chr1:38151237(-) A-G intron -    22484847
chr1:38151239(-) A-G intron -    22484847
chr1:38151242(-) A-G intron -    22484847
chr1:38152505(-) A-G intron -    22484847
chr1:38152537(-) A-G intron -    22484847
chr1:38152587(-) A-G intron -    22484847
chr1:38152603(-) A-G intron -    22484847
chr1:38152665(-) A-G intron -    22484847
chr1:38152867(-) A-G intron -    22484847
chr1:38152896(-) A-G intron -    22484847
chr1:38152969(-) A-G intron -    22484847
chr1:38153625(-) C-T intron -    22484847
chr1:38153655(-) A-G intron -    22484847
chr1:38153892(-) A-G intron -    22484847
chr1:38153893(-) A-G intron -    22484847
chr1:38154490(-) A-G intron -    22484847
chr1:38154513(-) A-G intron -    22484847
chr1:38154591(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase C1orf109
chr1:38148459-38148460(-) m6A 3'UTR//exon       24981863
chr1:38148483-38148484(-) m6A 3'UTR//exon       24209618//25456834//24981863
chr1:38148508-38148509(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//22608085
chr1:38148533-38148534(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//27371828//22608085
chr1:38148664-38148665(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085
chr1:38148672-38148673(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085
chr1:38148687-38148688(-) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085
chr1:38148737-38148738(-) m6A 3'UTR//exon       25456834//24981863//22608085
chr1:38148750-38148751(-) m6A 3'UTR//exon       25456834//24981863//22608085
chr1:38148772-38148773(-) m6A 3'UTR//exon       24981863//22608085
chr1:38149009-38149010(-) m6A 3'UTR//CDS//exon       27773535
chr1:38149028-38149029(-) m6A 3'UTR//CDS//exon       27773535
chr1:38149055-38149056(-) m6A 3'UTR//CDS//exon       27773535
chr1:38149064-38149065(-) m6A 3'UTR//CDS//exon       27773535
chr1:38155879-38155880(-) m6A 5'UTR//exon//intron       27773535
chr1:38155910-38155911(-) m6A 5'UTR//exon//intron       24209618//27773535
chr1:38155984-38155985(-) m6A 5'UTR//exon//intron       24209618//27773536
chr1:38156018-38156019(-) m6A 5'UTR//exon//intron       24209618//24981863//27371828//27773536
chr1:38156074-38156075(-) m6A 5'UTR//exon//intron       24209618//25456834//24981863//27371828//27773536
chr1:38156079-38156080(-) m6A 5'UTR//exon//intron       24209618//25456834//24981863//27371828//27773536
chr1:38156135-38156136(-) m6A 5'UTR//exon//intron       24284625//24209618//25456834//24981863//22608085
chr1:38156188-38156189(-) m6A 5'UTR//intron       25456834//24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate C1orf109
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B19-5p
Interactor2: C1orf109

Evidence Support:


Prediction-Evidence miRanda//PITA
Support Database VmiReg

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