Basic Information:

  VIRBase ID:  

VHID00565373

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B19-5p:  MIMAT0031769          RIPK1:  NM_001354931     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hbv-miR-B19-5p	RIPK1
miRBase Accession/Entrez ID	MIMAT0031769	8737
Organism	Macacine alphaherpesvirus 1 (CeHV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	AIEFL//IMD57//RIP//RIP-1//RIP1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RIPK1	chr6:3103010(+) A-I      intronic chr6:3096196(+) A-I      intronic chr6:3096305(+) A-I      intronic chr6:3096153(+) A-I      intronic chr6:3095247(+) A-I      intronic chr6:3096214(+) A-I      intronic chr6:3100991(+) A-I      intronic chr6:3096209(+) A-I      intronic chr6:3100460(+) A-I      intronic chr6:3102886(+) A-I      intronic chr6:3101024(+) A-I      intronic chr6:3101007(+) A-I      intronic chr6:3095262(+) A-I      intronic chr6:3100986(+) A-I      intronic chr6:3100899(+) A-I      intronic chr6:3099703(+) A-I      intronic chr6:3099698(+) A-I      intronic chr6:3098180(+) A-I      intronic chr6:3097305(+) A-I      intronic chr6:3097217(+) A-I      intronic chr6:3097209(+) A-I      intronic chr6:3096146(+) A-I      intronic chr6:3096129(+) A-I      intronic chr6:3096122(+) A-I      intronic chr6:3099515(+) A-I      intronic chr6:3095081(+) A-I      intronic chr6:3095125(+) A-I      intronic chr6:3100477(+) A-I      intronic chr6:3095095(+) A-I      intronic chr6:3100446(+) A-I      intronic chr6:3098156(+) A-I      intronic chr6:3095086(+) A-I      intronic chr6:3099529(+) A-I      intronic chr6:3099540(+) A-I      intronic chr6:3096292(+) A-I      intronic chr6:3096280(+) A-I      intronic chr6:3096345(+) A-I      intronic chr6:3095145(+) A-I      intronic chr6:3098396(+) A-I      intronic chr6:3101365(+) A-I      intronic chr6:3078526(+) A-I      intronic chr6:3098335(+) A-I      intronic chr6:3096182(+) A-I      intronic chr6:3095236(+) A-I      intronic chr6:3110478(+) A-I      intronic chr6:3099631(+) A-I      intronic chr6:3101591(+) A-I      intronic chr6:3095070(+) A-I      intronic chr6:3095105(+) A-I      intronic chr6:3097185(+) A-I      intronic chr6:3101333(+) A-I      intronic chr6:3078348(+) A-I      intronic chr6:3096103(+) A-I      intronic chr6:3099761(+) A-I      intronic chr6:3095212(+) A-I      intronic chr6:3084931(+) A-I      intronic chr6:3101317(+) A-I      intronic chr6:3095263(+) A-I      intronic chr6:3096245(+) A-I      intronic chr6:3096172(+) A-I      intronic chr6:3095244(+) A-I      intronic chr6:3078347(+) A-I      intronic chr6:3103628(+) A-I      intronic chr6:3078406(+) A-I      intronic chr6:3101318(+) A-I      intronic chr6:3101488(+) A-I      intronic chr6:3107612(+) A-I      intronic chr6:3101326(+) A-I      intronic chr6:3096178(+) A-I      intronic chr6:3101061(+) A-I      intronic chr6:3082006(+) A-I      intronic chr6:3096332(+) A-I      intronic chr6:3098286(+) A-I      intronic chr6:3099524(+) A-I      intronic chr6:3097128(+) A-I      intronic chr6:3095287(+) A-I      intronic chr6:3096212(+) A-I      intronic chr6:3095194(+) A-I      intronic chr6:3098329(+) A-I      intronic chr6:3078315(+) A-I      intronic chr6:3078313(+) A-I      intronic chr6:3103019(+) A-I      intronic chr6:3078354(+) A-I      intronic chr6:3099780(+) A-I      intronic chr6:3101362(+) A-I      intronic chr6:3101101(+) A-I      intronic chr6:3096134(+) A-I      intronic chr6:3103675(+) A-I      intronic chr6:3107229(+) A-I      intronic chr6:3095237(+) A-I      intronic chr6:3095196(+) A-I      intronic chr6:3098248(+) A-I      intronic chr6:3095217(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RIPK1	chr6:3078353(+) A-I intron -    21960545 chr6:3078313(+) A-G intron -    22484847 chr6:3078315(+) A-G intron -    22484847 chr6:3078347(+) A-G intron -    22484847 chr6:3078348(+) A-G intron -    22484847 chr6:3084842(+) C-T intron -    22484847 chr6:3096172(+) A-G intron -    22484847 chr6:3096183(+) A-G intron -    22484847 chr6:3096254(+) A-G intron -    22484847 chr6:3096306(+) A-G intron -    22484847 chr6:3098248(+) A-G intron -    22484847 chr6:3098286(+) A-G intron -    22484847 chr6:3101333(+) A-G intron -    22484847 chr6:3101362(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RIPK1	chr6:3064281-3064282(+) m6A exon       27773536 chr6:3068725-3068726(+) m6A 5'UTR//intron       24981863//27773536 chr6:3068800-3068801(+) m6A 5'UTR//intron       24209618//24981863//27773536 chr6:3068859-3068860(+) m6A 5'UTR//intron       24209618//27773536 chr6:3077067-3077068(+) m6A CDS//intron       24209618 chr6:3077122-3077123(+) m6A CDS//intron       - chr6:3077127-3077128(+) m6A CDS//intron       - chr6:3077168-3077169(+) m6A CDS//intron       - chr6:3077176-3077177(+) m6A CDS//intron       - chr6:3077192-3077193(+) m6A CDS//intron       - chr6:3078050-3078051(+) m6A CDS//exon       - chr6:3078060-3078061(+) m6A CDS//exon       - chr6:3105722-3105723(+) m6A CDS//exon       24284625//24209618 chr6:3105752-3105753(+) m6A CDS//exon       24284625//24209618//24981863//22608085 chr6:3105839-3105840(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr6:3105883-3105884(+) m6A CDS//exon       24284625//24209618//25456834//24981863//22608085 chr6:3105896-3105897(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//22608085 chr6:3105908-3105909(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//22608085 chr6:3105980-3105981(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr6:3106102-3106103(+) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr6:3106134-3106135(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr6:3106139-3106140(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr6:3106155-3106156(+) m6A CDS//exon       24284625//24209618//24981863//26404942//22575960//22608085 chr6:3106230-3106231(+) m6A CDS//exon       24284625//24981863//22608085 chr6:3111132-3111133(+) m6A CDS       24284625//22608085 chr6:3111147-3111148(+) m6A CDS       24284625//22608085 chr6:3113311-3113312(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr6:3113319-3113320(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085 chr6:3113355-3113356(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:3113368-3113369(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr6:3113425-3113426(+) m6A CDS       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:3113568-3113569(+) m6A CDS       24284625//24209618//25456834//24981863//22608085 chr6:3113779-3113780(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr6:3113787-3113788(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr6:3113892-3113893(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr6:3114027-3114028(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr6:3114094-3114095(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:3114129-3114130(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:3114221-3114222(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085 chr6:3114334-3114335(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr6:3114469-3114470(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr6:3114501-3114502(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr6:3114507-3114508(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr6:3114602-3114603(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:3114661-3114662(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:3114681-3114682(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:3114694-3114695(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085 chr6:3114739-3114740(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr6:3114820-3114821(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085 chr6:3114890-3114891(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RIPK1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Insoluble cytoplasm HCC cell line (HepG2)     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells     - Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):

Interactor1: hbv-miR-B19-5p
Interactor2: RIPK1

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid//Targetscan
Support Database	VmiReg