Detail Information

Basic Information:


  VIRBase ID:  

VHID00565073

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B19-5p:           STMN1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B19-5p STMN1
miRBase
Accession/Entrez ID		 MIMAT0031769 3925
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - C1orf215//Lag//LAP18//OP18//PP17//PP19//PR22//SMN

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR STMN1
chr1:26221005(-) A-I      intronic
chr1:26221133(-) A-I      intronic
chr1:26221014(-) A-I      intronic
chr1:26220953(-) A-I      intronic
chr1:26220950(-) A-I      intronic
chr1:26220129(-) A-I      intronic
chr1:26218834(-) A-I      intronic
chr1:26218793(-) A-I      intronic
chr1:26211118(-) A-I      3'UTR
chr1:26210993(-) A-I      3'UTR
chr1:26210953(-) A-I      3'UTR
chr1:26220196(-) A-I      intronic
chr1:26221336(-) A-I      intronic
chr1:26218833(-) A-I      intronic
chr1:26221088(-) A-I      intronic
chr1:26217702(-) A-I      intronic
chr1:26220998(-) A-I      intronic
chr1:26214256(-) A-I      intronic
chr1:26218713(-) A-I      intronic
chr1:26221103(-) A-I      intronic
chr1:26214346(-) A-I      intronic
chr1:26223632(-) A-I      intronic
chr1:26220988(-) A-I      intronic
chr1:26221342(-) A-I      intronic
chr1:26218696(-) A-I      intronic
chr1:26220225(-) A-I      intronic
chr1:26220311(-) A-I      intronic
chr1:26221691(-) A-I      intronic
chr1:26218735(-) A-I      intronic
chr1:26221076(-) A-I      intronic
chr1:26213368(-) A-I      intronic
chr1:26221262(-) A-I      intronic
chr1:26214232(-) A-I      intronic
chr1:26221715(-) A-I      intronic
chr1:26213305(-) A-I      intronic
chr1:26218674(-) A-I      intronic
chr1:26210931(-) A-I      3'UTR
chr1:26221690(-) A-I      intronic
chr1:26221335(-) A-I      intronic
chr1:26221792(-) A-I      intronic
chr1:26220936(-) A-I      intronic
chr1:26218624(-) A-I      intronic
chr1:26221059(-) A-I      intronic
chr1:26223692(-) A-I      intronic
chr1:26223766(-) A-I      intronic
chr1:26221001(-) A-I      intronic
chr1:26220142(-) A-I      intronic
chr1:26220094(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED STMN1
chr1:26226672(-) T-C exon 3'UTR    21725310
chr1:26220988(-) A-G intron -    22484847
chr1:26221076(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase STMN1
chr1:26210763-26210764(-) m6A exon       24981863
chr1:26210792-26210793(-) m6A exon       24981863
chr1:26210830-26210831(-) m6A exon       24981863
chr1:26210851-26210852(-) m6A exon       24981863
chr1:26211492-26211493(-) m6A exon       24981863
chr1:26211539-26211540(-) m6A exon       24981863
chr1:26211596-26211597(-) m6A exon       24981863
chr1:26211669-26211670(-) m6A exon       27371828
chr1:26211840-26211841(-) m6A exon       25456834//27371828
chr1:26211879-26211880(-) m6A exon       27371828
chr1:26211904-26211905(-) m6A exon       27371828
chr1:26211929-26211930(-) m6A exon       -
chr1:26211949-26211950(-) m6A 3'UTR//exon       -
chr1:26211987-26211988(-) m6A 3'UTR//exon       -
chr1:26212100-26212101(-) m6A 3'UTR//exon       -
chr1:26227330-26227331(-) m6A 3'UTR//exon//intron       24284625//26404942//27773535
chr1:26227366-26227367(-) m6A 3'UTR//exon//intron       24284625//24981863//26404942//27773535//22608085
chr1:26227375-26227376(-) Cm 3'UTR//exon//intron       -
chr1:26227391-26227392(-) m6A 3'UTR//exon//intron       24284625//24981863//28052920//26404942//27773535//22575960//22608085
chr1:26227455-26227456(-) m6A 3'UTR//exon//intron       24284625//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:26227493-26227494(-) m6A 3'UTR//exon//intron       24284625//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:26227520-26227521(-) m6A CDS//exon//intron       24284625//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:26227534-26227535(-) m6A CDS//exon//intron       24284625//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:26227549-26227550(-) m6A CDS//exon//intron       24284625//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:26227917-26227918(-) m6A exon//intron       24284625//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr1:26227988-26227989(-) Gm CDS//exon       -
chr1:26228002-26228003(-) m6A CDS//exon       24284625//24981863//28052920//27773535//27371828//22575960//22608085
chr1:26228027-26228028(-) m6A CDS//exon       24284625//24981863//28052920//27773535//27371828//22575960//22608085
chr1:26228059-26228060(-) m6A CDS//exon       24284625//24981863//28052920//27773535//27371828//22575960//22608085
chr1:26228090-26228091(-) m6A CDS//exon       24284625//24981863//28052920//27773535//27371828//22575960//22608085
chr1:26228186-26228187(-) m6A exon//intron       24981863//28052920//27773535//22608085
chr1:26228295-26228296(-) m6A exon//intron       -
chr1:26229344-26229345(-) m6A exon//intron       -
chr1:26230050-26230051(-) m6A exon//intron       24981863
chr1:26230287-26230288(-) m6A CDS//exon       24284625//24981863//27371828//22575960
chr1:26231644-26231645(-) m6A 5'UTR//intron       24981863
chr1:26231650-26231651(-) m6A 5'UTR//intron       24981863
chr1:26232607-26232608(-) m6A 5'UTR//intron       24981863
chr1:26232887-26232888(-) m6A 5'UTR//exon//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate STMN1
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B19-5p
Interactor2: STMN1

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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