Basic Information:

  VIRBase ID:  

VHID00564864

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2202

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B19-5p:  MIMAT0031769          RCC1:  NM_001381865     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hbv-miR-B19-5p	RCC1
miRBase Accession/Entrez ID	MIMAT0031769	1104
Organism	Macacine alphaherpesvirus 1 (CeHV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	CHC1//RCC1-I//SNHG3-RCC1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RCC1	chr1:28842043(+) A-I      intronic chr1:28854302(+) A-I      intronic chr1:28842078(+) A-I      intronic chr1:28854332(+) A-I      intronic chr1:28840583(+) A-I      intronic chr1:28842053(+) A-I      intronic chr1:28857796(+) A-I      intronic chr1:28854320(+) A-I      intronic chr1:28840671(+) A-I      intronic chr1:28840677(+) A-I      intronic chr1:28854289(+) A-I      intronic chr1:28842071(+) A-I      intronic chr1:28850429(+) A-I      intronic chr1:28846160(+) A-I      intronic chr1:28842073(+) A-I      intronic chr1:28842042(+) A-I      intronic chr1:28840678(+) A-I      intronic chr1:28840601(+) A-I      intronic chr1:28840648(+) A-I      intronic chr1:28840587(+) A-I      intronic chr1:28840497(+) A-I      intronic chr1:28840487(+) A-I      intronic chr1:28840307(+) A-I      intronic chr1:28840286(+) A-I      intronic chr1:28840130(+) A-I      intronic chr1:28839907(+) A-I      intronic chr1:28839892(+) A-I      intronic chr1:28839890(+) A-I      intronic chr1:28839806(+) A-I      intronic chr1:28839714(+) A-I      intronic chr1:28839690(+) A-I      intronic chr1:28839684(+) A-I      intronic chr1:28839559(+) A-I      intronic chr1:28839408(+) A-I      intronic chr1:28853989(+) A-I      intronic chr1:28841625(+) A-I      intronic chr1:28846484(+) A-I      intronic chr1:28846470(+) A-I      intronic chr1:28846463(+) A-I      intronic chr1:28846319(+) A-I      intronic chr1:28854406(+) A-I      intronic chr1:28846179(+) A-I      intronic chr1:28838411(+) A-I      intronic chr1:28838397(+) A-I      intronic chr1:28838314(+) A-I      intronic chr1:28846097(+) A-I      intronic chr1:28842416(+) A-I      intronic chr1:28842334(+) A-I      intronic chr1:28842186(+) A-I      intronic chr1:28842090(+) A-I      intronic chr1:28839459(+) A-I      intronic chr1:28841628(+) A-I      intronic chr1:28841614(+) A-I      intronic chr1:28841613(+) A-I      intronic chr1:28841356(+) A-I      intronic chr1:28841262(+) A-I      intronic chr1:28841261(+) A-I      intronic chr1:28841228(+) A-I      intronic chr1:28841205(+) A-I      intronic chr1:28841150(+) A-I      intronic chr1:28841126(+) A-I      intronic chr1:28839436(+) A-I      intronic chr1:28859467(+) A-I      intronic chr1:28859457(+) A-I      intronic chr1:28859428(+) A-I      intronic chr1:28840656(+) A-I      intronic chr1:28859346(+) A-I      intronic chr1:28857534(+) A-I      intronic chr1:28855883(+) A-I      intronic chr1:28855862(+) A-I      intronic chr1:28855861(+) A-I      intronic chr1:28855825(+) A-I      intronic chr1:28855622(+) A-I      intronic chr1:28855504(+) A-I      intronic chr1:28855068(+) A-I      intronic chr1:28855052(+) A-I      intronic chr1:28854993(+) A-I      intronic chr1:28854883(+) A-I      intronic chr1:28854862(+) A-I      intronic chr1:28854857(+) A-I      intronic chr1:28859386(+) A-I      intronic chr1:28854360(+) A-I      intronic chr1:28854351(+) A-I      intronic chr1:28854346(+) A-I      intronic chr1:28854338(+) A-I      intronic chr1:28854312(+) A-I      intronic chr1:28854288(+) A-I      intronic chr1:28853881(+) A-I      intronic chr1:28853845(+) A-I      intronic chr1:28853428(+) A-I      intronic chr1:28853427(+) A-I      intronic chr1:28853250(+) A-I      intronic chr1:28853207(+) A-I      intronic chr1:28851147(+) A-I      intronic chr1:28851137(+) A-I      intronic chr1:28847934(+) A-I      intronic chr1:28853821(+) A-I      intronic chr1:28841352(+) A-I      intronic chr1:28840226(+) A-I      intronic chr1:28854758(+) A-I      intronic chr1:28855835(+) A-I      intronic chr1:28855970(+) A-I      intronic chr1:28838452(+) A-I      intronic chr1:28841347(+) A-I      intronic chr1:28839715(+) A-I      intronic chr1:28854427(+) A-I      intronic chr1:28855934(+) A-I      intronic chr1:28853864(+) A-I      intronic chr1:28857673(+) A-I      intronic chr1:28842679(+) A-I      intronic chr1:28855514(+) A-I      intronic chr1:28854612(+) A-I      intronic chr1:28847586(+) A-I      intronic chr1:28839371(+) A-I      intronic chr1:28853314(+) A-I      intronic chr1:28841673(+) A-I      intronic chr1:28840657(+) A-I      intronic chr1:28851303(+) A-I      intronic chr1:28850458(+) A-I      intronic chr1:28843513(+) A-I      intronic chr1:28854710(+) A-I      intronic chr1:28850967(+) A-I      intronic chr1:28853893(+) A-I      intronic chr1:28855751(+) A-I      intronic chr1:28839811(+) A-I      intronic chr1:28841276(+) A-I      intronic chr1:28859594(+) A-I      intronic chr1:28853775(+) A-I      intronic chr1:28857683(+) A-I      intronic chr1:28846166(+) A-I      intronic chr1:28842494(+) A-I      intronic chr1:28857896(+) A-I      intronic chr1:28855019(+) A-I      intronic chr1:28855669(+) A-I      intronic chr1:28855081(+) A-I      intronic chr1:28861253(+) A-I      intronic chr1:28840674(+) A-I      intronic chr1:28839387(+) A-I      intronic chr1:28854023(+) A-I      intronic chr1:28838066(+) A-I      intronic chr1:28852767(+) A-I      intronic chr1:28840297(+) A-I      intronic chr1:28841243(+) A-I      intronic chr1:28853795(+) A-I      intronic chr1:28857630(+) A-I      intronic chr1:28855479(+) A-I      intronic chr1:28840238(+) A-I      intronic chr1:28850468(+) A-I      intronic chr1:28837982(+) A-I      intronic chr1:28841682(+) A-I      intronic chr1:28839975(+) A-I      intronic chr1:28839645(+) A-I      intronic chr1:28840139(+) A-I      intronic chr1:28840230(+) A-I      intronic chr1:28839807(+) A-I      intronic chr1:28861167(+) A-I      intronic chr1:28839781(+) A-I      intronic chr1:28853801(+) A-I      intronic chr1:28846149(+) A-I      intronic chr1:28854603(+) A-I      intronic chr1:28839516(+) A-I      intronic chr1:28840158(+) A-I      intronic chr1:28840153(+) A-I      intronic chr1:28840644(+) A-I      intronic chr1:28840560(+) A-I      intronic chr1:28853926(+) A-I      intronic chr1:28846454(+) A-I      intronic chr1:28849317(+) A-I      intronic chr1:28841073(+) A-I      intronic chr1:28857879(+) A-I      intronic chr1:28840743(+) A-I      intronic chr1:28852732(+) A-I      intronic chr1:28841765(+) A-I      intronic chr1:28841851(+) A-I      intronic chr1:28839968(+) A-I      intronic chr1:28838652(+) A-I      intronic chr1:28840242(+) A-I      intronic chr1:28855020(+) A-I      intronic chr1:28850981(+) A-I      intronic chr1:28854401(+) A-I      intronic chr1:28838360(+) A-I      intronic chr1:28853800(+) A-I      intronic chr1:28840679(+) A-I      intronic chr1:28839688(+) A-I      intronic chr1:28839644(+) A-I      intronic chr1:28840114(+) A-I      intronic chr1:28854704(+) A-I      intronic chr1:28860415(+) A-I      intronic chr1:28840231(+) A-I      intronic chr1:28840365(+) A-I      intronic chr1:28846159(+) A-I      intronic chr1:28855776(+) A-I      intronic chr1:28847758(+) A-I      intronic chr1:28847471(+) A-I      intronic chr1:28839484(+) A-I      intronic chr1:28841098(+) A-I      intronic chr1:28854268(+) A-I      intronic chr1:28854453(+) A-I      intronic chr1:28847512(+) A-I      intronic chr1:28840287(+) A-I      intronic chr1:28840608(+) A-I      intronic chr1:28840236(+) A-I      intronic chr1:28851142(+) A-I      intronic chr1:28839776(+) A-I      intronic chr1:28839800(+) A-I      intronic chr1:28855439(+) A-I      intronic chr1:28851108(+) A-I      intronic chr1:28839969(+) A-I      intronic chr1:28839927(+) A-I      intronic chr1:28839871(+) A-I      intronic chr1:28839846(+) A-I      intronic chr1:28855905(+) A-I      intronic chr1:28839887(+) A-I      intronic chr1:28860464(+) A-I      intronic chr1:28857662(+) A-I      intronic chr1:28853188(+) A-I      intronic chr1:28839848(+) A-I      intronic chr1:28853901(+) A-I      intronic chr1:28854525(+) A-I      intronic chr1:28855795(+) A-I      intronic chr1:28840713(+) A-I      intronic chr1:28842516(+) A-I      intronic chr1:28838229(+) A-I      intronic chr1:28839547(+) A-I      intronic chr1:28839528(+) A-I      intronic chr1:28839710(+) A-I      intronic chr1:28853941(+) A-I      intronic chr1:28839448(+) A-I      intronic chr1:28851016(+) A-I      intronic chr1:28847449(+) A-I      intronic chr1:28841343(+) A-I      intronic chr1:28851350(+) A-I      intronic chr1:28854560(+) A-I      intronic chr1:28841019(+) A-I      intronic chr1:28853805(+) A-I      intronic chr1:28855475(+) A-I      intronic chr1:28839855(+) A-I      intronic chr1:28854817(+) A-I      intronic chr1:28853927(+) A-I      intronic chr1:28838357(+) A-I      intronic chr1:28853265(+) A-I      intronic chr1:28854848(+) A-I      intronic chr1:28860954(+) A-I      intronic chr1:28842705(+) A-I      intronic chr1:28838088(+) A-I      intronic chr1:28854369(+) A-I      intronic chr1:28841285(+) A-I      intronic chr1:28840109(+) A-I      intronic chr1:28840570(+) A-I      intronic chr1:28841608(+) A-I      intronic chr1:28838063(+) A-I      intronic chr1:28840611(+) A-I      intronic chr1:28853146(+) A-I      intronic chr1:28846216(+) A-I      intronic chr1:28842862(+) A-I      intronic chr1:28839731(+) A-I      intronic chr1:28857647(+) A-I      intronic chr1:28839882(+) A-I      intronic chr1:28857722(+) A-I      intronic chr1:28839977(+) A-I      intronic chr1:28859734(+) A-I      intronic chr1:28846211(+) A-I      intronic chr1:28851309(+) A-I      intronic chr1:28838253(+) A-I      intronic chr1:28839981(+) A-I      intronic chr1:28851274(+) A-I      intronic chr1:28861061(+) A-I      intronic chr1:28841960(+) A-I      intronic chr1:28840590(+) A-I      intronic chr1:28841681(+) A-I      intronic chr1:28840613(+) A-I      intronic chr1:28857620(+) A-I      intronic chr1:28857872(+) A-I      intronic chr1:28839368(+) A-I      intronic chr1:28860900(+) A-I      intronic chr1:28853885(+) A-I      intronic chr1:28839546(+) A-I      intronic chr1:28850968(+) A-I      intronic chr1:28839446(+) A-I      intronic chr1:28853990(+) A-I      intronic chr1:28851160(+) A-I      intronic chr1:28842736(+) A-I      intronic chr1:28850556(+) A-I      intronic chr1:28842770(+) A-I      intronic chr1:28841018(+) A-I      intronic chr1:28849247(+) A-I      intronic chr1:28840673(+) A-I      intronic chr1:28840538(+) A-I      intronic chr1:28840534(+) A-I      intronic chr1:28854510(+) A-I      intronic chr1:28840489(+) A-I      intronic chr1:28842108(+) A-I      intronic chr1:28855879(+) A-I      intronic chr1:28839370(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RCC1	chr1:28836973(+) A-I exon 5'UTR    15342557 chr1:28836974(+) A-I exon 5'UTR    15342557 chr1:28836975(+) A-I exon 5'UTR    15342557 chr1:28836979(+) A-I exon 5'UTR    15342557 chr1:28836986(+) A-I exon 5'UTR    15342557 chr1:28836987(+) A-I exon 5'UTR    15342557 chr1:28836994(+) A-I exon 5'UTR    15342557 chr1:28837025(+) A-I exon 5'UTR    15342557 chr1:28837931(+) G-T intron -    22484847 chr1:28837932(+) A-T intron -    22484847 chr1:28838088(+) A-G intron -    22484847 chr1:28838279(+) T-C intron -    22484847 chr1:28838431(+) A-C intron -    22484847 chr1:28839368(+) A-G intron -    22484847 chr1:28839370(+) A-G intron -    22484847 chr1:28839371(+) A-G intron -    22484847 chr1:28839446(+) A-G intron -    22484847 chr1:28839528(+) A-G intron -    22484847 chr1:28839546(+) A-G intron -    22484847 chr1:28839547(+) A-G intron -    22484847 chr1:28839644(+) A-G intron -    22484847 chr1:28839688(+) A-G intron -    22484847 chr1:28839705(+) C-T intron -    22484847 chr1:28839710(+) A-G intron -    22484847 chr1:28839781(+) A-G intron -    22484847 chr1:28839800(+) A-G intron -    22484847 chr1:28839807(+) A-G intron -    22484847 chr1:28839846(+) A-G intron -    22484847 chr1:28839848(+) A-G intron -    22484847 chr1:28839895(+) T-C intron -    22484847 chr1:28839927(+) A-G intron -    22484847 chr1:28839977(+) A-G intron -    22484847 chr1:28840109(+) A-G intron -    22484847 chr1:28840114(+) A-G intron -    22484847 chr1:28840226(+) A-G intron -    22484847 chr1:28840260(+) C-G intron -    22484847 chr1:28840365(+) A-G intron -    22484847 chr1:28840560(+) A-G intron -    22484847 chr1:28840608(+) A-G intron -    22484847 chr1:28840644(+) A-G intron -    22484847 chr1:28841608(+) A-G intron -    22484847 chr1:28843557(+) T-C intron -    22484847 chr1:28846149(+) A-G intron -    22484847 chr1:28846159(+) A-G intron -    22484847 chr1:28846166(+) A-G intron -    22484847 chr1:28846216(+) A-G intron -    22484847 chr1:28847586(+) A-G intron -    22484847 chr1:28851274(+) A-G intron -    22484847 chr1:28851303(+) A-G intron -    22484847 chr1:28853188(+) A-G intron -    22484847 chr1:28853265(+) A-G intron -    22484847 chr1:28853775(+) A-G intron -    22484847 chr1:28853800(+) A-G intron -    22484847 chr1:28853801(+) A-G intron -    22484847 chr1:28853805(+) A-G intron -    22484847 chr1:28853893(+) A-G intron -    22484847 chr1:28853941(+) A-G intron -    22484847 chr1:28853990(+) A-G intron -    22484847 chr1:28854268(+) A-G intron -    22484847 chr1:28854427(+) A-G intron -    22484847 chr1:28855019(+) A-G intron -    22484847 chr1:28855020(+) A-G intron -    22484847 chr1:28855475(+) A-G intron -    22484847 chr1:28855479(+) A-G intron -    22484847 chr1:28855751(+) A-G intron -    22484847 chr1:28855879(+) A-G intron -    22484847 chr1:28857570(+) G-A intron -    22484847 chr1:28857620(+) A-G intron -    22484847 chr1:28857647(+) A-G intron -    22484847 chr1:28857673(+) A-G intron -    22484847 chr1:28857852(+) C-T intron -    22484847 chr1:28857872(+) A-G intron -    22484847 chr1:28857879(+) A-G intron -    22484847 chr1:28859594(+) A-G intron -    22484847 chr1:28860900(+) A-G intron -    22484847 chr1:28860954(+) A-G intron -    22484847 chr1:28861253(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RCC1	chr1:28833099-28833100(+) m6A intron       22575960 chr1:28833107-28833108(+) m6A intron       22575960 chr1:28833948-28833949(+) Tm intron       - chr1:28835140-28835141(+) Tm intron       - chr1:28835237-28835238(+) m6A intron       25456834//22575960 chr1:28835421-28835422(+) m6A intron       27773535 chr1:28835466-28835467(+) m6A intron       27773535 chr1:28836533-28836534(+) m6A intron       22575960 chr1:28836593-28836594(+) m6A 5'UTR//intron       27773535//22575960 chr1:28836648-28836649(+) m6A intron       22575960 chr1:28836669-28836670(+) m6A intron       22575960 chr1:28836680-28836681(+) m6A intron       22575960 chr1:28836719-28836720(+) m6A intron       - chr1:28836801-28836802(+) m6A intron       - chr1:28843266-28843267(+) m6A 5'UTR//intron       24981863//27773535 chr1:28843369-28843370(+) m6A 5'UTR//intron       24981863//27773535 chr1:28845398-28845399(+) m6A 5'UTR//CDS//intron       24981863 chr1:28845434-28845435(+) m6A 5'UTR//CDS//intron       24209618//24981863 chr1:28845447-28845448(+) m6A 5'UTR//CDS//intron       24284625//24209618//24981863 chr1:28847198-28847199(+) Am intron       - chr1:28857117-28857118(+) m6A CDS//intron       24284625//22575960 chr1:28858339-28858340(+) m6A CDS       24284625//22575960 chr1:28858415-28858416(+) m1A CDS       26863196 chr1:28858725-28858726(+) m6A CDS//exon       24284625//22575960 chr1:28858803-28858804(+) m6A CDS//exon       22575960 chr1:28861830-28861831(+) m6A CDS//exon       24284625 chr1:28862809-28862810(+) m6A CDS//exon       24284625 chr1:28864434-28864435(+) m6A CDS       24284625//24981863//22575960//22608085 chr1:28864445-28864446(+) m6A CDS       24284625//24981863//26404942//22575960//22608085 chr1:28864502-28864503(+) m6A CDS       24284625//25456834//24981863//26404942//22575960//22608085 chr1:28864509-28864510(+) m6A CDS       24284625//25456834//24981863//26404942//22575960//22608085 chr1:28864568-28864569(+) m6A 3'UTR       24284625//25456834//24981863//26404942//22575960//22608085 chr1:28864656-28864657(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr1:28864705-28864706(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr1:28864730-28864731(+) m6A 3'UTR       24284625//25456834//24981863//22575960//22608085 chr1:28864750-28864751(+) m6A 3'UTR       24284625//25456834//24981863//22608085 chr1:28864842-28864843(+) m6A 3'UTR       24284625 chr1:28864848-28864849(+) m6A 3'UTR       24284625 chr1:28864952-28864953(+) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chr1:28864987-28864988(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:28865066-28865067(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:28865081-28865082(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085 chr1:28865229-28865230(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085 chr1:28865292-28865293(+) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085 chr1:28865339-28865340(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr1:28865361-28865362(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr1:28865379-28865380(+) m6A 3'UTR       24284625//24981863//27773535//22608085 chr1:28865455-28865456(+) m6A 3'UTR       24981863//27773535

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	RCC1	Chromatin K562 cells     - Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     - Ribosome HEK-293 cells     22199352 Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hbv-miR-B19-5p
Interactor2: RCC1

Evidence Support:

Prediction-Evidence	miRanda//RNAHybrid
Support Database	VmiReg