Basic Information:

  VIRBase ID:  

VHID00564056

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2381

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B8-3p:  MIMAT0031768          LSM11:  NM_173491     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hbv-miR-B8-3p	LSM11
miRBase Accession/Entrez ID	MIMAT0031768	134353
Organism	Macacine alphaherpesvirus 1 (CeHV-1)	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	LSM11	chr5:157178052(+) A-I      intronic chr5:157181609(+) A-I      intronic chr5:157173716(+) A-I      intronic chr5:157177931(+) A-I      intronic chr5:157178010(+) A-I      intronic chr5:157178042(+) A-I      intronic chr5:157184023(+) A-I      3'UTR chr5:157183990(+) A-I      3'UTR chr5:157185366(+) A-I      3'UTR chr5:157184123(+) A-I      3'UTR chr5:157184086(+) A-I      3'UTR chr5:157184016(+) A-I      3'UTR chr5:157185357(+) A-I      3'UTR chr5:157183964(+) A-I      3'UTR chr5:157183956(+) A-I      3'UTR chr5:157184131(+) A-I      3'UTR chr5:157185343(+) A-I      3'UTR chr5:157184180(+) A-I      3'UTR chr5:157184013(+) A-I      3'UTR chr5:157184009(+) A-I      3'UTR chr5:157185375(+) A-I      3'UTR chr5:157173797(+) A-I      intronic chr5:157183921(+) A-I      3'UTR chr5:157185311(+) A-I      3'UTR chr5:157185294(+) A-I      3'UTR chr5:157184012(+) A-I      3'UTR chr5:157183959(+) A-I      3'UTR chr5:157185216(+) A-I      3'UTR chr5:157184014(+) A-I      3'UTR chr5:157184059(+) A-I      3'UTR chr5:157185302(+) A-I      3'UTR chr5:157184095(+) A-I      3'UTR chr5:157185151(+) A-I      3'UTR chr5:157185319(+) A-I      3'UTR chr5:157185261(+) A-I      3'UTR chr5:157185323(+) A-I      3'UTR chr5:157183920(+) A-I      3'UTR chr5:157183988(+) A-I      3'UTR chr5:157184063(+) A-I      3'UTR chr5:157185223(+) A-I      3'UTR chr5:157185376(+) A-I      3'UTR chr5:157185192(+) A-I      3'UTR chr5:157185336(+) A-I      3'UTR chr5:157185388(+) A-I      3'UTR chr5:157184080(+) A-I      3'UTR chr5:157185252(+) A-I      3'UTR chr5:157183912(+) A-I      3'UTR chr5:157185227(+) A-I      3'UTR chr5:157173830(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	LSM11	chr5:157181954-157181955(+) m6A CDS       24284625//22608085 chr5:157181994-157181995(+) m6A CDS       24284625//25456834//24981863//22608085 chr5:157182089-157182090(+) m6A CDS       24284625//25456834//24981863//22608085 chr5:157182098-157182099(+) m6A CDS       24284625//25456834//24981863//22608085 chr5:157182437-157182438(+) m6A 3'UTR       24981863 chr5:157183239-157183240(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	LSM11	Exosome Blood     - Nucleoplasm K562 cells     - Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):

Interactor1: hbv-miR-B8-3p
Interactor2: LSM11

Evidence Support:

Prediction-Evidence	miRanda//PITA//RNAHybrid
Support Database	VmiReg