Detail Information

Basic Information:


  VIRBase ID:  

VHID00563736

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B8-3p:           CCDC142:      

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Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B8-3p CCDC142
miRBase
Accession/Entrez ID		 MIMAT0031768 84865
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - -

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CCDC142
chr2:74706239(-) A-I      intronic
chr2:74706238(-) A-I      intronic
chr2:74706226(-) A-I      intronic
chr2:74707623(-) A-I      intronic
chr2:74707471(-) A-I      intronic
chr2:74706832(-) A-I      intronic
chr2:74706813(-) A-I      intronic
chr2:74706199(-) A-I      intronic
chr2:74706106(-) A-I      intronic
chr2:74706077(-) A-I      intronic
chr2:74706071(-) A-I      intronic
chr2:74706070(-) A-I      intronic
chr2:74700553(-) A-I      3'UTR
chr2:74700586(-) A-I      3'UTR
chr2:74700554(-) A-I      3'UTR
chr2:74705327(-) A-I      intronic
chr2:74707704(-) A-I      intronic
chr2:74707523(-) A-I      intronic
chr2:74705326(-) A-I      intronic
chr2:74706926(-) A-I      intronic
chr2:74705291(-) A-I      intronic
chr2:74705707(-) A-I      intronic
chr2:74706831(-) A-I      intronic
chr2:74706318(-) A-I      intronic
chr2:74707553(-) A-I      intronic
chr2:74706252(-) A-I      intronic
chr2:74707498(-) A-I      intronic
chr2:74706031(-) A-I      intronic
chr2:74707609(-) A-I      intronic
chr2:74706794(-) A-I      intronic
chr2:74705601(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CCDC142
chr2:74705326(-) A-G intron -    22484847
chr2:74705327(-) A-G intron -    22484847
chr2:74706235(-) A-G intron -    22484847
chr2:74706831(-) A-G intron -    22484847
chr2:74707704(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CCDC142
chr2:74699122-74699123(-) m6A 3'UTR       24981863//28052920//27773535//22608085
chr2:74699201-74699202(-) m6A 3'UTR       24981863//28052920//27773535//22608085
chr2:74699207-74699208(-) m6A 3'UTR       24284625//24981863//28052920//27773535//22575960//22608085
chr2:74699231-74699232(-) m6A 3'UTR       24284625//24981863//28052920//27773535//22575960//22608085
chr2:74699273-74699274(-) m6A 3'UTR       24284625//24981863//27773535//22575960
chr2:74699745-74699746(-) m6A 3'UTR       24981863//22575960
chr2:74700350-74700351(-) m6A intron       24284625//24981863//27773535//22608085
chr2:74700397-74700398(-) m6A intron       24981863//27773535//22608085
chr2:74700925-74700926(-) m6A 3'UTR//intron       24284625
chr2:74701306-74701307(-) m6A 3'UTR//intron       24284625
chr2:74701404-74701405(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//22608085
chr2:74701427-74701428(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//22608085
chr2:74701463-74701464(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//22608085
chr2:74701579-74701580(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22608085
chr2:74701611-74701612(-) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22608085
chr2:74701661-74701662(-) m6A 3'UTR//intron       24284625//25456834//24981863//27773535//22575960//22608085
chr2:74701689-74701690(-) m6A CDS//exon//intron       24284625//25456834//24981863//27773535//22575960//22608085
chr2:74701792-74701793(-) m6A CDS//exon//intron       24284625//25456834//24981863
chr2:74701827-74701828(-) m6A CDS//exon//intron       24284625
chr2:74701842-74701843(-) m6A CDS//exon//intron       24284625
chr2:74701908-74701909(-) m6A CDS//exon//intron       24284625
chr2:74708583-74708584(-) m6A CDS//exon//intron       24284625
chr2:74708615-74708616(-) m6A CDS//exon//intron       24284625//25456834
chr2:74708702-74708703(-) m6A exon//intron       24284625//25456834
chr2:74708987-74708988(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr2:74708998-74708999(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr2:74709011-74709012(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr2:74709045-74709046(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr2:74709088-74709089(-) m6A CDS//exon//intron       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr2:74709179-74709180(-) m6A CDS//exon//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr2:74709448-74709449(-) m6A CDS//intron       24284625//24981863//27371828//27773536//22575960//22608085
chr2:74709483-74709484(-) m6A CDS//intron       24284625//24981863//27371828//27773536//22575960//22608085
chr2:74709594-74709595(-) m6A CDS//intron       24284625//24981863//27371828//27773536//22575960//22608085
chr2:74709635-74709636(-) m6A CDS//intron       24284625//24981863//27371828//27773536//22575960//22608085
chr2:74709767-74709768(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr2:74709816-74709817(-) m6A CDS//intron       24284625//25456834//24981863//27371828//27773536//22608085
chr2:74709975-74709976(-) m6A 5'UTR//intron       24284625//25456834//27371828//27773536//22608085
chr2:74710068-74710069(-) m6A 5'UTR//intron       24284625//25456834//24981863//27371828//27773536//22608085
chr2:74710154-74710155(-) m6A 5'UTR//intron       25456834//24981863//27773536
chr2:74710290-74710291(-) m6A 5'UTR//exon       24284625//25456834//24981863
chr2:74710320-74710321(-) m6A 5'UTR//exon       24284625//24981863
chr2:74710331-74710332(-) m6A 5'UTR//exon       24284625//24981863
chr2:74710407-74710408(-) m6A exon       25456834//24981863
chr2:74710515-74710516(-) m6A exon       25456834//24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate CCDC142
Cytosol K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B8-3p
Interactor2: CCDC142

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

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