Detail Information

Basic Information:


  VIRBase ID:  

VHID00563227

  Virus:  

Macacine alphaherpesvirus 1 (CeHV-1)

  Host:  

Homo sapiens

  Confidence Score:  

0.2455

  Interaction Type:  

Virus-Host interaction

  Predicted Binding:

 

      hbv-miR-B8-3p:           SIPA1L2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hbv-miR-B8-3p SIPA1L2
miRBase
Accession/Entrez ID		 MIMAT0031768 57568
Organism Macacine alphaherpesvirus 1 (CeHV-1) Homo sapiens
Category miRNA mRNA
Alias - SPAL2//SPAR2

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SIPA1L2
chr1:232625784(-) A-I      intronic
chr1:232625789(-) A-I      intronic
chr1:232625797(-) A-I      intronic
chr1:232625848(-) A-I      intronic
chr1:232665966(-) A-I      intronic
chr1:232623852(-) A-I      intronic
chr1:232624711(-) A-I      intronic
chr1:232665992(-) A-I      intronic
chr1:232625813(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SIPA1L2
chr1:232605626(-) A-I intron -    21960545
chr1:232605676(-) A-I intron -    21960545
chr1:232624602(-) A-I intron -    21960545
chr1:232624642(-) A-I intron -    21960545
chr1:232624711(-) A-I intron -    21960545
chr1:232625834(-) A-I intron -    21960545
chr1:232625848(-) A-I intron -    21960545

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SIPA1L2
chr1:232533760-232533761(-) m6A 3'UTR       27773535
chr1:232534258-232534259(-) m6A 3'UTR       24981863
chr1:232534444-232534445(-) m6A 3'UTR       27773535
chr1:232534456-232534457(-) m6A 3'UTR       27773535
chr1:232534589-232534590(-) m6A 3'UTR       24981863
chr1:232534600-232534601(-) m6A 3'UTR       24981863
chr1:232534615-232534616(-) m6A 3'UTR       24981863//22608085
chr1:232534633-232534634(-) m6A 3'UTR       24981863//22608085
chr1:232534811-232534812(-) m6A 3'UTR       22608085
chr1:232534849-232534850(-) m6A 3'UTR       22608085
chr1:232534937-232534938(-) m6A CDS//exon       27773535
chr1:232534956-232534957(-) m6A CDS//exon       27773535
chr1:232534966-232534967(-) m6A CDS//exon       27773535
chr1:232534971-232534972(-) m6A CDS//exon       27773535
chr1:232535008-232535009(-) m6A CDS//exon       27773535
chr1:232535013-232535014(-) m6A CDS//exon       27773535
chr1:232538151-232538152(-) m6A CDS//exon       27773535
chr1:232579367-232579368(-) m6A CDS       27773536
chr1:232579376-232579377(-) m6A CDS       27773536
chr1:232579391-232579392(-) m6A CDS       27773536
chr1:232581439-232581440(-) m6A CDS       24284625
chr1:232581455-232581456(-) m6A CDS       -
chr1:232600613-232600614(-) m6A CDS       27773535
chr1:232600628-232600629(-) m6A CDS       27773535
chr1:232600695-232600696(-) m6A CDS       24981863//27773535//22608085
chr1:232600817-232600818(-) m6A CDS       24284625//25456834//24981863//27371828//22608085
chr1:232600961-232600962(-) m6A CDS       24284625//24981863//27773535//22575960//22608085
chr1:232601072-232601073(-) m6A CDS       24284625//24981863//27773535//22608085
chr1:232615378-232615379(-) m6A CDS       27773535
chr1:232615426-232615427(-) m6A CDS       27773535
chr1:232615433-232615434(-) m6A CDS       27773535
chr1:232619545-232619546(-) m6A CDS       27773535
chr1:232629375-232629376(-) m6A CDS//exon       24981863
chr1:232629396-232629397(-) m6A CDS//exon       24981863
chr1:232649651-232649652(-) m6A CDS       24981863//27773535
chr1:232649694-232649695(-) m6A CDS       24981863//27773535
chr1:232649839-232649840(-) m6A CDS       24284625//25456834//24981863//22575960//22608085
chr1:232649910-232649911(-) m6A CDS       24284625//25456834//24981863//27371828//22575960//22608085
chr1:232649928-232649929(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr1:232649965-232649966(-) m6A CDS       24284625//25456834//24981863//27773535//27371828//22575960//22608085
chr1:232649986-232649987(-) m6A CDS       24284625//25456834//24981863//27773535//22575960//22608085
chr1:232650018-232650019(-) m6A CDS       24284625//25456834//24981863//27773535//22575960//22608085
chr1:232650175-232650176(-) m6A CDS       24284625//25456834//24981863//26404942//27773535//22608085
chr1:232650196-232650197(-) m6A CDS       24284625//25456834//24981863//26404942//22608085
chr1:232650220-232650221(-) m6A CDS       24284625//25456834//24981863//26404942//22608085
chr1:232650261-232650262(-) m6A CDS       24284625//25456834//24981863//26404942//22608085
chr1:232650267-232650268(-) m6A CDS       24284625//25456834//24981863//26404942//22608085
chr1:232650291-232650292(-) m6A CDS       24284625//25456834//24981863//26404942//22608085
chr1:232650465-232650466(-) m6A CDS       22608085
chr1:232650558-232650559(-) m6A CDS       24284625//24981863//22608085
chr1:232650614-232650615(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr1:232650629-232650630(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr1:232650657-232650658(-) m6A CDS       24284625//24981863//27773535//27371828//22575960//22608085
chr1:232650687-232650688(-) m6A CDS       24284625//24981863//27773535//27371828//22575960//22608085
chr1:232650701-232650702(-) m6A CDS       24284625//24981863//27773535//27371828//22608085
chr1:232650772-232650773(-) m6A CDS       24284625//25456834//24981863//27371828//22575960//22608085
chr1:232650822-232650823(-) m6A CDS       24284625//25456834//24981863//26404942//22575960//22608085
chr1:232650910-232650911(-) m6A CDS       24284625//25456834//24981863//22575960//22608085
chr1:232650947-232650948(-) m6A CDS       24284625//24981863//22608085
chr1:232651086-232651087(-) m6A 5'UTR       22608085
chr1:232651109-232651110(-) m6A 5'UTR       22608085
chr1:232651187-232651188(-) m6A 5'UTR       24981863//22608085
chr1:232697248-232697249(-) m6A 5'UTR       -
chr1:232697259-232697260(-) m6A 5'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate SIPA1L2
Exosome Blood     -
Nucleus Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hbv-miR-B8-3p
Interactor2: SIPA1L2

Evidence Support:


Prediction-Evidence miRanda//PITA//RNAHybrid//Targetscan
Support Database VmiReg

Starting a new search, please wait ...